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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0034841 through 18771 annotations produced 1 hits



(CG13541):

Annotation Number : CG13541
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0034841
Gbrowse : chr2R:19171826-19172345 (+) // 100.0 //
Probeset : 1636525_at
Accessions : protein= NP_611775;, nucleotide= NM_137931;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0034841.
BioGrid reports that CG13541 interacts with CG3662 CG4583 CG17666 CG8414 CG9467 .
VDRC has 2 RNAi stocks for FBgn0034841 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain3 ± 00 of 4 0.10Down
Head8 ± 30 of 4 0.20Down
Eye1 ± 00 of 4 0.04Down
Thoracicoabdominal ganglion2 ± 10 of 4 0.10Down
Salivary gland31 ± 52 of 4 0.73None
Crop3 ± 10 of 4 0.10Down
Midgut3 ± 10 of 4 0.10Down
Tubule4 ± 00 of 4 0.10Down
Hindgut2 ± 10 of 4 0.10Down
Heart3 ± 20 of 4 0.09Down
Fat body8 ± 20 of 4 0.21Down
Ovary3 ± 00 of 4 0.10Down
Testis449 ± 204 of 410.60Up
Male accessory glands2 ± 00 of 4 0.10Down
Virgin spermatheca5 ± 10 of 4 0.13Down
Mated spermatheca7 ± 20 of 4 0.17Down
Adult carcass4 ± 10 of 4 0.10Down
Larval CNS3 ± 30 of 4 0.07Down
Larval Salivary gland9 ± 40 of 4 0.21Down
Larval midgut1 ± 00 of 4 0.04Down
Larval tubule7 ± 20 of 4 0.20Down
Larval hindgut9 ± 10 of 4 0.23Down
Larval fat body61 ± 214 of 4 1.50None
Larval trachea4 ± 40 of 4 0.11Down
Larval carcass10 ± 30 of 4 0.25Down
S2 cells (growing)8 ± 10 of 4 0.19Down
Whole fly42 ± 34 of 4

Looking for FBgn0034841. 1 entries matched from 18771, in 3 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime