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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0034844 through 18771 annotations produced 1 hits



(CG9861):

Annotation Number : CG9861
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0034844
Gbrowse : chr2R:19211181-19214271 (+) // 100.0 //
Probeset : 1637187_at
Accessions : protein= NP_611778;, nucleotide= NM_137934;
FlyMine data for FBgn0034844.
VDRC has 2 RNAi stocks for FBgn0034844 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain3 ± 10 of 4 0.00Down
Head3 ± 10 of 4 0.00Down
Eye4 ± 20 of 4 0.03Down
Thoracicoabdominal ganglion6 ± 50 of 4 0.10Down
Salivary gland7 ± 10 of 4 0.06Down
Crop2 ± 00 of 4 0.00Down
Midgut3 ± 00 of 4 0.00Down
Tubule5 ± 00 of 4 0.00Down
Hindgut2 ± 00 of 4 0.00Down
Heart1 ± 00 of 4 0.01Down
Fat body3 ± 00 of 4 0.03Down
Ovary3 ± 10 of 4 0.00Down
Testis1022 ± 104 of 4 8.70Up
Male accessory glands11 ± 30 of 4 0.10Down
Virgin spermatheca7 ± 30 of 4 0.06Down
Mated spermatheca9 ± 20 of 4 0.08Down
Adult carcass5 ± 10 of 4 0.00Down
Larval CNS1 ± 10 of 4 0.02Down
Larval Salivary gland8 ± 10 of 4 0.08Down
Larval midgut3 ± 00 of 4 0.03Down
Larval tubule6 ± 20 of 4 0.10Down
Larval hindgut3 ± 00 of 4 0.03Down
Larval fat body126 ± 553 of 4 1.10None
Larval trachea4 ± 40 of 4 0.04Down
Larval carcass4 ± 00 of 4 0.04Down
S2 cells (growing)3 ± 00 of 4 0.03Down
Whole fly117 ± 94 of 4

Looking for FBgn0034844. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime