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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0034846 through 18771 annotations produced 1 hits


Annotation Number : CG9863
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0034846
Gbrowse : chr2R:19234157-19235300 (+) // 100.0 //
Probeset : 1629951_at
Accessions : protein= NP_611780;, nucleotide= NM_137936;
FlyMine data for FBgn0034846.
BDGP gene expression has embryonic in situ data for CG9863: 2 pix of staining in 1 body parts.
VDRC has 4 RNAi stocks for FBgn0034846 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 10 of 4 0.00Down
Head4 10 of 4 0.10Down
Eye1 10 of 4 0.04Down
Thoracicoabdominal ganglion3 00 of 4 0.10Down
Salivary gland4 30 of 4 0.10Down
Crop6 11 of 4 0.20Down
Midgut2 10 of 4 0.10Down
Tubule3 00 of 4 0.10Down
Hindgut3 00 of 4 0.10Down
Heart2 00 of 4 0.05Down
Fat body3 20 of 4 0.08Down
Ovary0 00 of 4 0.00Down
Testis476 94 of 410.40Up
Male accessory glands2 10 of 4 0.00Down
Virgin spermatheca4 10 of 4 0.09Down
Mated spermatheca3 00 of 4 0.07Down
Adult carcass7 10 of 4 0.20Down
Larval CNS2 10 of 4 0.05Down
Larval Salivary gland6 12 of 4 0.14Down
Larval midgut1 00 of 4 0.04Down
Larval tubule1 00 of 4 0.00Down
Larval hindgut2 11 of 4 0.05Down
Larval fat body45 223 of 4 1.00None
Larval trachea3 31 of 4 0.08Down
Larval carcass1 00 of 4 0.03Down
S2 cells (growing)1 00 of 4 0.03Down
Whole fly45 24 of 4

Looking for FBgn0034846. 1 entries matched from 18771, in 2 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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