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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0034850 through 18771 annotations produced 1 hits


(CG9875):

Annotation Number : CG9875
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0034850
Gbrowse : chr2R:19245201-19246068 (+) // 100.0 //
Probeset : 1631174_at
Accessions : protein= NP_001163262; /// NP_611784;, nucleotide= NM_001169791; /// NM_137940;
Interpro : 0016874 // ligase activity // inferred from electronic annotation /// 0030272 // 5-formyltetrahydrofolate cyclo-ligase a
FlyMine data for FBgn0034850.
BDGP gene expression has embryonic in situ data for CG9875: 4 pix of staining in 1 body parts.
VDRC has 2 RNAi stocks for FBgn0034850 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2 ± 10 of 4 0.00Down
Head1 ± 00 of 4 0.00Down
Eye1 ± 00 of 4 0.01Down
Thoracicoabdominal ganglion2 ± 00 of 4 0.00Down
Salivary gland7 ± 40 of 4 0.08Down
Crop2 ± 00 of 4 0.00Down
Midgut2 ± 00 of 4 0.00Down
Tubule2 ± 00 of 4 0.00Down
Hindgut2 ± 10 of 4 0.00Down
Heart1 ± 00 of 4 0.02Down
Fat body3 ± 10 of 4 0.04Down
Ovary3 ± 00 of 4 0.00Down
Testis963 ± 244 of 410.10Up
Male accessory glands120 ± 124 of 4 1.30None
Virgin spermatheca2 ± 10 of 4 0.03Down
Mated spermatheca1 ± 00 of 4 0.02Down
Adult carcass2 ± 00 of 4 0.00Down
Larval CNS3 ± 30 of 4 0.04Down
Larval Salivary gland1 ± 10 of 4 0.02Down
Larval midgut2 ± 00 of 4 0.02Down
Larval tubule4 ± 10 of 4 0.00Down
Larval hindgut3 ± 10 of 4 0.03Down
Larval fat body72 ± 273 of 4 0.80None
Larval trachea6 ± 71 of 4 0.07Down
Larval carcass7 ± 00 of 4 0.08Down
S2 cells (growing)4 ± 00 of 4 0.05Down
Whole fly95 ± 64 of 4

Looking for FBgn0034850. 1 entries matched from 18771, in 0 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime