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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0034854 through 18771 annotations produced 1 hits



(CG3493):

Annotation Number : CG3493
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0034854
Gbrowse : chr2R:19258873-19264535 (-) // 100.0 //
Probeset : 1623264_at
Accessions : protein= NP_611787;, nucleotide= NM_137943;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0034854.
BioGrid reports that CG3493 interacts with CG3645 CG3610 CG7264 .
VDRC has 1 RNAi stocks for FBgn0034854 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain242 84 of 4 1.70Up
Head197 94 of 4 1.40Up
Eye149 34 of 4 1.06None
Thoracicoabdominal ganglion230 34 of 4 1.60Up
Salivary gland279 94 of 4 1.98Up
Crop215 24 of 4 1.50Up
Midgut200 64 of 4 1.40Up
Tubule298 64 of 4 2.10Up
Hindgut268 54 of 4 1.90Up
Heart130 34 of 4 0.93None
Fat body166 74 of 4 1.18None
Ovary204 54 of 4 1.50Up
Testis85 14 of 4 0.60Down
Male accessory glands265 84 of 4 1.90Up
Virgin spermatheca217 104 of 4 1.54Up
Mated spermatheca231 164 of 4 1.64Up
Adult carcass202 94 of 4 1.40Up
Larval CNS121 54 of 4 0.86None
Larval Salivary gland239 44 of 4 1.70Up
Larval midgut165 84 of 4 1.17None
Larval tubule484 144 of 4 3.40Up
Larval hindgut234 124 of 4 1.66Up
Larval fat body151 44 of 4 1.10None
Larval trachea150 44 of 4 1.07None
Larval carcass199 104 of 4 1.41Up
S2 cells (growing)218 94 of 4 1.55Up
Whole fly141 84 of 4

Looking for FBgn0034854. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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