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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0034859 through 18771 annotations produced 1 hits



(CG3520):

Annotation Number : CG3520
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0034859
Gbrowse : chr2R:19284288-19289832 (-) // 100.0 //
Probeset : 1625459_at
Accessions : protein= NP_611792;, nucleotide= NM_137948;
Interpro : 0005488 // binding // inferred from electronic annotation
FlyMine data for FBgn0034859.
BDGP gene expression has embryonic in situ data for CG3520: 10 pix of staining in 3 body parts.
VDRC has 1 RNAi stocks for FBgn0034859 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain45 14 of 4 1.30None
Head20 14 of 4 0.60Down
Eye23 24 of 4 0.65Down
Thoracicoabdominal ganglion50 04 of 4 1.40Up
Salivary gland36 52 of 4 1.01None
Crop25 24 of 4 0.70Down
Midgut39 34 of 4 1.10None
Tubule36 13 of 4 1.00None
Hindgut24 04 of 4 0.70Down
Heart22 34 of 4 0.62Down
Fat body31 104 of 4 0.88None
Ovary73 64 of 4 2.10Up
Testis20 04 of 4 0.60Down
Male accessory glands48 44 of 4 1.40None
Virgin spermatheca28 14 of 4 0.79Down
Mated spermatheca29 44 of 4 0.82None
Adult carcass28 24 of 4 0.80Down
Larval CNS78 74 of 4 2.18Up
Larval Salivary gland84 44 of 4 2.36Up
Larval midgut44 34 of 4 1.26None
Larval tubule37 14 of 4 1.00None
Larval hindgut45 44 of 4 1.28None
Larval fat body29 33 of 4 0.80None
Larval trachea54 114 of 4 1.53Up
Larval carcass56 34 of 4 1.57Up
S2 cells (growing)61 24 of 4 1.73Up
Whole fly35 14 of 4

Looking for FBgn0034859. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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