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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0034860 through 18771 annotations produced 1 hits



(CG9812):

Annotation Number : CG9812
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0034860
Gbrowse : chr2R:19299858-19307207 (-) // 100.0 //
Probeset : 1625780_a_at
Accessions : protein= NP_611793; /// NP_726324;, nucleotide= NM_137949; /// NM_166604;
FlyMine data for FBgn0034860.
BDGP gene expression has embryonic in situ data for CG9812: 8 pix of staining in 2 body parts.
VDRC has 1 RNAi stocks for FBgn0034860 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain77 ± 54 of 4 0.20Down
Head1965 ± 904 of 4 4.20Up
Eye693 ± 394 of 4 1.47Up
Thoracicoabdominal ganglion51 ± 74 of 4 0.10Down
Salivary gland140 ± 124 of 4 0.30Down
Crop66 ± 54 of 4 0.10Down
Midgut61 ± 54 of 4 0.10Down
Tubule27 ± 04 of 4 0.10Down
Hindgut156 ± 64 of 4 0.30Down
Heart86 ± 84 of 4 0.18Down
Fat body69 ± 194 of 4 0.15Down
Ovary5 ± 00 of 4 0.00Down
Testis7 ± 12 of 4 0.00Down
Male accessory glands20 ± 14 of 4 0.00Down
Virgin spermatheca40 ± 34 of 4 0.09Down
Mated spermatheca68 ± 74 of 4 0.15Down
Adult carcass1736 ± 454 of 4 3.70Up
Larval CNS65 ± 54 of 4 0.14Down
Larval Salivary gland77 ± 64 of 4 0.16Down
Larval midgut63 ± 44 of 4 0.13Down
Larval tubule23 ± 42 of 4 0.00Down
Larval hindgut640 ± 84 of 4 1.36Up
Larval fat body4031 ± 5564 of 4 8.50Up
Larval trachea3132 ± 3954 of 4 6.63Up
Larval carcass2033 ± 1014 of 4 4.30Up
S2 cells (growing)154 ± 104 of 4 0.33Down
Whole fly472 ± 254 of 4

Looking for FBgn0034860. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime