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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0034861 through 18771 annotations produced 1 hits



(CG9815):

Annotation Number : CG9815
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0034861
Gbrowse : chr2R:19309231-19310176 (-) // 100.0 //
Probeset : 1630229_at
Accessions : protein= NP_001097434; /// NP_611794;, nucleotide= NM_001103964; /// NM_137950;
FlyMine data for FBgn0034861.
VDRC has 3 RNAi stocks for FBgn0034861 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain9 ± 20 of 4 0.50Down
Head35 ± 32 of 4 1.80Up
Eye57 ± 44 of 4 2.87Up
Thoracicoabdominal ganglion6 ± 10 of 4 0.30Down
Salivary gland25 ± 21 of 4 1.28None
Crop676 ± 574 of 433.90Up
Midgut14 ± 10 of 4 0.70None
Tubule9 ± 00 of 4 0.40Down
Hindgut57 ± 24 of 4 2.90Up
Heart8 ± 20 of 4 0.43Down
Fat body20 ± 50 of 4 1.01None
Ovary17 ± 23 of 4 0.90None
Testis21 ± 33 of 4 1.10None
Male accessory glands120 ± 44 of 4 6.00Up
Virgin spermatheca8 ± 00 of 4 0.44Down
Mated spermatheca6 ± 10 of 4 0.30Down
Adult carcass29 ± 40 of 4 1.50None
Larval CNS6 ± 20 of 4 0.30Down
Larval Salivary gland12 ± 20 of 4 0.63None
Larval midgut23 ± 14 of 4 1.17None
Larval tubule8 ± 10 of 4 0.40Down
Larval hindgut53 ± 34 of 4 2.70Up
Larval fat body8 ± 20 of 4 0.40Down
Larval trachea148 ± 144 of 4 7.42Up
Larval carcass36 ± 53 of 4 1.81None
S2 cells (growing)189 ± 24 of 4 9.48Up
Whole fly20 ± 23 of 4

Looking for FBgn0034861. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime