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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0034863 through 18771 annotations produced 1 hits


skpF (skpF):

Annotation Number : CG12227
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0034863
Gbrowse : chr2R:19345585-19346282 (-) // 100.0 //
Probeset : 1639319_at
Accessions : protein= NP_611796;, nucleotide= NM_137952;
Pathway : 0000152 // nuclear ubiquitin ligase complex // inferred from sequence or structural similarity
Interpro : 0004842 // ubiquitin-protein ligase activity // inferred from sequence or structural similarity /// 0004842 // ubiquitin
FlyMine data for FBgn0034863.
BioGrid reports that CG12227 interacts with CG14053 CG33017 CG33144 CG9316 CG13138 .
VDRC has 2 RNAi stocks for FBgn0034863 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 ± 00 of 4 0.00Down
Head1 ± 00 of 4 0.00Down
Eye2 ± 10 of 4 0.05Down
Thoracicoabdominal ganglion0 ± 00 of 4 0.00Down
Salivary gland1 ± 00 of 4 0.04Down
Crop5 ± 00 of 4 0.10Down
Midgut3 ± 10 of 4 0.10Down
Tubule1 ± 00 of 4 0.00Down
Hindgut1 ± 00 of 4 0.00Down
Heart2 ± 00 of 4 0.05Down
Fat body7 ± 10 of 4 0.15Down
Ovary1 ± 00 of 4 0.00Down
Testis745 ± 224 of 415.30Up
Male accessory glands2 ± 00 of 4 0.00Down
Virgin spermatheca1 ± 00 of 4 0.03Down
Mated spermatheca1 ± 00 of 4 0.04Down
Adult carcass1 ± 00 of 4 0.00Down
Larval CNS2 ± 20 of 4 0.04Down
Larval Salivary gland4 ± 20 of 4 0.09Down
Larval midgut4 ± 00 of 4 0.08Down
Larval tubule0 ± 00 of 4 0.00Down
Larval hindgut1 ± 00 of 4 0.02Down
Larval fat body35 ± 193 of 4 0.70None
Larval trachea4 ± 31 of 4 0.10Down
Larval carcass2 ± 10 of 4 0.05Down
S2 cells (growing)0 ± 00 of 4 0.01Down
Whole fly48 ± 24 of 4

Looking for FBgn0034863. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime