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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0034870 through 18771 annotations produced 1 hits



(CG13559):

Annotation Number : CG13559
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0034870
Gbrowse : chr2R:19390852-19391197 (+) // 100.0 //
Probeset : 1632341_at
Accessions : protein= NP_611801;, nucleotide= NM_137957;
FlyMine data for FBgn0034870.
VDRC has 3 RNAi stocks for FBgn0034870 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2 ± 10 of 4 0.20Down
Head30 ± 04 of 4 1.90Up
Eye10 ± 12 of 4 0.69None
Thoracicoabdominal ganglion3 ± 10 of 4 0.20Down
Salivary gland15 ± 30 of 4 0.96None
Crop1 ± 00 of 4 0.10Down
Midgut1 ± 00 of 4 0.10Down
Tubule3 ± 00 of 4 0.20Down
Hindgut3 ± 10 of 4 0.20Down
Heart38 ± 44 of 4 2.44Up
Fat body35 ± 74 of 4 2.25Up
Ovary2 ± 00 of 4 0.20Down
Testis1 ± 00 of 4 0.10Down
Male accessory glands1021 ± 254 of 464.30Up
Virgin spermatheca43 ± 64 of 4 2.75Up
Mated spermatheca48 ± 34 of 4 3.02Up
Adult carcass32 ± 33 of 4 2.00Up
Larval CNS3 ± 20 of 4 0.24Down
Larval Salivary gland3 ± 10 of 4 0.24Down
Larval midgut7 ± 20 of 4 0.46Down
Larval tubule13 ± 20 of 4 0.80None
Larval hindgut3 ± 10 of 4 0.21Down
Larval fat body5 ± 10 of 4 0.30Down
Larval trachea3 ± 10 of 4 0.22Down
Larval carcass12 ± 10 of 4 0.81None
S2 cells (growing)59 ± 24 of 4 3.75Up
Whole fly15 ± 23 of 4

Looking for FBgn0034870. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime