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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0034876 through 18771 annotations produced 1 hits

pterodactyl (wmd):

Annotation Number : CG3957
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0034876
Gbrowse : chr2R:19432341-19435490 (-) // 100.0 //
Probeset : 1637194_at
Accessions : protein= NP_001097436; /// NP_611804;, nucleotide= NM_001103966; /// NM_137960;
Pathway : 0005875 // microtubule associated complex // inferred from direct assay
Interpro : 0005102 // receptor binding // inferred from sequence or structural similarity
FlyMine data for FBgn0034876.
BDGP gene expression has embryonic in situ data for CG3957: 15 pix of staining in 7 body parts.
Homophila reports that CG3957 is a close match (1e-13) to human gene LIS1;PAFAH1B1 (NP_000421), a gene associated with Lissencephaly-1, 607432 (3);Subcortical laminar heterotopia (3).
VDRC has 1 RNAi stocks for FBgn0034876 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain275 124 of 4 1.40Up
Head159 74 of 4 0.80Down
Eye189 94 of 4 0.95None
Thoracicoabdominal ganglion248 104 of 4 1.20Up
Salivary gland257 154 of 4 1.29Up
Crop211 104 of 4 1.10None
Midgut159 44 of 4 0.80Down
Tubule405 54 of 4 2.00Up
Hindgut264 34 of 4 1.30Up
Heart163 114 of 4 0.82None
Fat body140 224 of 4 0.70Down
Ovary358 134 of 4 1.80Up
Testis313 54 of 4 1.60Up
Male accessory glands302 134 of 4 1.50Up
Virgin spermatheca231 94 of 4 1.16None
Mated spermatheca258 144 of 4 1.30Up
Adult carcass200 74 of 4 1.00None
Larval CNS330 154 of 4 1.66Up
Larval Salivary gland312 144 of 4 1.57Up
Larval midgut127 34 of 4 0.64Down
Larval tubule232 74 of 4 1.20None
Larval hindgut213 94 of 4 1.07None
Larval fat body179 24 of 4 0.90None
Larval trachea242 154 of 4 1.22Up
Larval carcass264 684 of 4 1.32None
S2 cells (growing)257 24 of 4 1.29Up
Whole fly199 114 of 4

Looking for FBgn0034876. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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