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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0034882 through 18771 annotations produced 1 hits



(CG5398):

Annotation Number : CG5398
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0034882
Gbrowse : chr2R:19490107-19491164 (+) // 100.0 //
Probeset : 1627305_at
Accessions : protein= NP_611810;, nucleotide= NM_137966;
Pathway : 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from sequence
Interpro : 0005215 // transporter activity // inferred from electronic annotation /// 0015250 // water channel activity // inferred
FlyMine data for FBgn0034882.
BDGP gene expression has embryonic in situ data for CG5398: 4 pix of staining in 1 body parts.
Homophila reports that CG5398 is a close match (4e-14) to human gene AQP2 (NP_000477), a gene associated with Diabetes insipidus, nephrogenic, 125800 (3).
VDRC has 2 RNAi stocks for FBgn0034882 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain4 ± 00 of 4 0.00Down
Head4 ± 00 of 4 0.10Down
Eye3 ± 00 of 4 0.05Down
Thoracicoabdominal ganglion4 ± 20 of 4 0.10Down
Salivary gland6 ± 10 of 4 0.07Down
Crop8 ± 21 of 4 0.10Down
Midgut12 ± 10 of 4 0.20Down
Tubule31 ± 04 of 4 0.40Down
Hindgut8 ± 10 of 4 0.10Down
Heart2 ± 10 of 4 0.03Down
Fat body8 ± 70 of 4 0.11Down
Ovary4 ± 20 of 4 0.10Down
Testis899 ± 394 of 411.20Up
Male accessory glands12 ± 31 of 4 0.20Down
Virgin spermatheca3 ± 10 of 4 0.04Down
Mated spermatheca5 ± 10 of 4 0.07Down
Adult carcass10 ± 31 of 4 0.10Down
Larval CNS5 ± 00 of 4 0.07Down
Larval Salivary gland9 ± 21 of 4 0.11Down
Larval midgut8 ± 11 of 4 0.10Down
Larval tubule10 ± 10 of 4 0.10Down
Larval hindgut4 ± 10 of 4 0.06Down
Larval fat body94 ± 454 of 4 1.20None
Larval trachea5 ± 41 of 4 0.07Down
Larval carcass8 ± 11 of 4 0.11Down
S2 cells (growing)6 ± 11 of 4 0.08Down
Whole fly80 ± 54 of 4

Looking for FBgn0034882. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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