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FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0034884 through 18771 annotations produced 1 hits



(CG17662):

Annotation Number : CG17662
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0034884
Gbrowse : chr2R:19493280-19494157 (-) // 100.0 //
Probeset : 1635254_at
Accessions : protein= NP_611812;, nucleotide= NM_137968;
Pathway : 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from sequence
Interpro : 0005215 // transporter activity // inferred from electronic annotation /// 0015250 // water channel activity // inferred
FlyMine data for FBgn0034884.
Homophila reports that CG17662 is a close match (1e-15) to human gene AQP3 (NP_004916), a gene associated with [Blood group GIL], 607457 (3).
VDRC has 1 RNAi stocks for FBgn0034884 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain4 ± 10 of 4 1.30None
Head6 ± 10 of 4 2.00None
Eye4 ± 10 of 4 1.48None
Thoracicoabdominal ganglion7 ± 10 of 4 2.30None
Salivary gland13 ± 50 of 4 4.05None
Crop8 ± 20 of 4 2.60None
Midgut10 ± 20 of 4 3.30Up
Tubule5 ± 00 of 4 1.60Up
Hindgut9 ± 20 of 4 2.90None
Heart3 ± 00 of 4 1.19None
Fat body3 ± 10 of 4 0.99None
Ovary7 ± 10 of 4 2.30None
Testis6 ± 00 of 4 1.90Up
Male accessory glands12 ± 10 of 4 3.80Up
Virgin spermatheca5 ± 10 of 4 1.55None
Mated spermatheca7 ± 20 of 4 2.29None
Adult carcass9 ± 20 of 4 2.80None
Larval CNS6 ± 10 of 4 1.92Up
Larval Salivary gland6 ± 10 of 4 1.95None
Larval midgut211 ± 54 of 464.04Up
Larval tubule5 ± 10 of 4 1.80None
Larval hindgut8 ± 20 of 4 2.45None
Larval fat body2 ± 00 of 4 0.70None
Larval trachea4 ± 20 of 4 1.51None
Larval carcass3 ± 00 of 4 0.97None
S2 cells (growing)4 ± 00 of 4 1.36None
Whole fly3 ± 00 of 4

Looking for FBgn0034884. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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