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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0034885 through 18771 annotations produced 1 hits



(CG4019):

Annotation Number : CG4019
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0034885
Gbrowse : chr2R:19495114-19502269 (-) // 100.0 //
Probeset : 1626308_s_at
Accessions : protein= NP_611813; /// NP_726347; /// NP_726348; /// NP_726349;, nucleotide= NM_137969; /// NM_166613; /// NM_166614; /// NM_166615;
Pathway : 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from sequence
Interpro : 0005215 // transporter activity // inferred from electronic annotation /// 0015250 // water channel activity // inferred
FlyMine data for FBgn0034885.
BDGP gene expression has embryonic in situ data for CG4019: 16 pix of staining in 4 body parts.
Homophila reports that CG4019 is a close match (4e-14) to human gene AQP3 (NP_004916), a gene associated with [Blood group GIL], 607457 (3).
VDRC has 4 RNAi stocks for FBgn0034885 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain72 54 of 4 0.20Down
Head1780 674 of 4 3.90Up
Eye1512 1724 of 4 3.32Up
Thoracicoabdominal ganglion69 54 of 4 0.20Down
Salivary gland2145 2094 of 4 4.71Up
Crop86 94 of 4 0.20Down
Midgut808 104 of 4 1.80Up
Tubule674 504 of 4 1.50Up
Hindgut162 54 of 4 0.40Down
Heart2097 954 of 4 4.61Up
Fat body3518 3504 of 4 7.73Up
Ovary4 00 of 4 0.00Down
Testis14 04 of 4 0.00Down
Male accessory glands21 24 of 4 0.00Down
Virgin spermatheca2732 1224 of 4 6.00Up
Mated spermatheca1794 1104 of 4 3.94Up
Adult carcass2117 594 of 4 4.70Up
Larval CNS16 54 of 4 0.04Down
Larval Salivary gland100 114 of 4 0.22Down
Larval midgut493 314 of 4 1.08None
Larval tubule1339 1014 of 4 2.90Up
Larval hindgut409 614 of 4 0.90None
Larval fat body752 874 of 4 1.70Up
Larval trachea84 364 of 4 0.19Down
Larval carcass1464 1544 of 4 3.22Up
S2 cells (growing)4 10 of 4 0.01Down
Whole fly455 294 of 4

Looking for FBgn0034885. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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