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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0034893 through 18771 annotations produced 1 hits



mitochondrial ribosomal protein L43 (mRpL43):

Annotation Number : CG5479
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0034893
Gbrowse : chr2R:19585630-19586537 (+) // 100.0 //
Probeset : 1624480_at
Accessions : protein= NP_523828;, nucleotide= NM_079104;
Pathway : 0005762 // mitochondrial large ribosomal subunit // inferred from sequence or structural similarity /// 0005840 // ribos
Interpro : 0003735 // structural constituent of ribosome // inferred from sequence or structural similarity
FlyMine data for FBgn0034893.
BDGP gene expression has embryonic in situ data for mRpL-CI-B8: 10 pix of staining in 10 body parts.
VDRC has 2 RNAi stocks for FBgn0034893 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain140 ± 64 of 4 1.00None
Head119 ± 64 of 4 0.90Down
Eye100 ± 114 of 4 0.72Down
Thoracicoabdominal ganglion165 ± 54 of 4 1.20Up
Salivary gland102 ± 114 of 4 0.73Down
Crop124 ± 44 of 4 0.90Down
Midgut132 ± 44 of 4 0.90None
Tubule107 ± 64 of 4 0.80Down
Hindgut119 ± 64 of 4 0.90Down
Heart126 ± 74 of 4 0.90None
Fat body129 ± 204 of 4 0.92None
Ovary198 ± 64 of 4 1.40Up
Testis121 ± 44 of 4 0.90Down
Male accessory glands116 ± 84 of 4 0.80None
Virgin spermatheca70 ± 64 of 4 0.50Down
Mated spermatheca93 ± 64 of 4 0.67Down
Adult carcass116 ± 94 of 4 0.80None
Larval CNS142 ± 144 of 4 1.02None
Larval Salivary gland141 ± 94 of 4 1.01None
Larval midgut66 ± 64 of 4 0.48Down
Larval tubule86 ± 44 of 4 0.60Down
Larval hindgut120 ± 54 of 4 0.86Down
Larval fat body93 ± 34 of 4 0.70Down
Larval trachea180 ± 94 of 4 1.29Up
Larval carcass94 ± 114 of 4 0.68Down
S2 cells (growing)127 ± 54 of 4 0.91None
Whole fly139 ± 44 of 4

Looking for FBgn0034893. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime