FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0034894 through 18771 annotations produced 1 hits

(CG4091):

Annotation Number : CG4091
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0034894
Gbrowse : chr2R:19586468-19589924 (-) // 100.0 //
Probeset : 1640962_s_at
Accessions : protein= NP_611820; /// NP_726357; /// NP_726358;, nucleotide= NM_137976; /// NM_166621; /// NM_166622;
Pathway : 0005737 // cytoplasm // inferred from sequence or structural similarity
Interpro : 0043027 // caspase inhibitor activity // inferred from sequence or structural similarity
FlyMine data for FBgn0034894.
BDGP gene expression has embryonic in situ data for CG4091: 8 pix of staining in 3 body parts.
VDRC has 2 RNAi stocks for FBgn0034894 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	340 ± 5	4 of 4	2.10	Up
Head	145 ± 4	4 of 4	0.90	None
Eye	159 ± 3	4 of 4	0.99	None
Thoracicoabdominal ganglion	303 ± 2	4 of 4	1.90	Up
Salivary gland	149 ± 4	4 of 4	0.92	None
Crop	92 ± 0	4 of 4	0.60	Down
Midgut	326 ± 8	4 of 4	2.00	Up
Tubule	142 ± 1	4 of 4	0.90	Down
Hindgut	106 ± 5	4 of 4	0.70	Down
Heart	77 ± 4	4 of 4	0.48	Down
Fat body	96 ± 6	4 of 4	0.60	Down
Ovary	423 ± 4	4 of 4	2.60	Up
Testis	39 ± 2	4 of 4	0.20	Down
Male accessory glands	55 ± 1	4 of 4	0.30	Down
Virgin spermatheca	77 ± 2	4 of 4	0.48	Down
Mated spermatheca	83 ± 3	4 of 4	0.51	Down
Adult carcass	131 ± 4	4 of 4	0.80	None
Larval CNS	208 ± 3	4 of 4	1.29	Up
Larval Salivary gland	152 ± 2	4 of 4	0.94	None
Larval midgut	507 ± 16	4 of 4	3.13	Up
Larval tubule	221 ± 16	4 of 4	1.40	Up
Larval hindgut	109 ± 5	4 of 4	0.67	Down
Larval fat body	36 ± 2	4 of 4	0.20	Down
Larval trachea	112 ± 7	4 of 4	0.70	Down
Larval carcass	80 ± 2	4 of 4	0.50	Down
S2 cells (growing)	352 ± 4	4 of 4	2.18	Up
Whole fly	161 ± 13	4 of 4

Looking for FBgn0034894. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720