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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0034898 through 18771 annotations produced 1 hits


Annotation Number : CG18128
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0034898
Gbrowse : chr2R:19606319-19607459 (-) // 100.0 //
Probeset : 1639197_at
Accessions : protein= NP_611822;, nucleotide= NM_137978;
Pathway : nucleoside
Interpro : nucleotide and nucleic acid metabolic process // inferred from electronic annotation /// 0009116 // nucleoside metaboli
FlyMine data for FBgn0034898.
Homophila reports that CG18128 is a close match (2e-47) to human gene NP (NP_000261), a gene associated with Nucleoside phosphorylase deficiency, immunodeficiency due to (3).
VDRC has 2 RNAi stocks for FBgn0034898 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 00 of 4 0.10Down
Head4 10 of 4 0.20Down
Eye2 10 of 4 0.13Down
Thoracicoabdominal ganglion2 00 of 4 0.10Down
Salivary gland7 10 of 4 0.40Down
Crop3 20 of 4 0.20Down
Midgut12 30 of 4 0.70None
Tubule7 10 of 4 0.40Down
Hindgut9 20 of 4 0.50Down
Heart2 10 of 4 0.15Down
Fat body6 30 of 4 0.38Down
Ovary2 00 of 4 0.20Down
Testis230 54 of 412.60Up
Male accessory glands8 30 of 4 0.40Down
Virgin spermatheca4 10 of 4 0.24Down
Mated spermatheca3 10 of 4 0.16Down
Adult carcass6 30 of 4 0.40Down
Larval CNS2 10 of 4 0.13Down
Larval Salivary gland10 20 of 4 0.55Down
Larval midgut3 00 of 4 0.20Down
Larval tubule2 10 of 4 0.20Down
Larval hindgut6 10 of 4 0.37Down
Larval fat body20 71 of 4 1.10None
Larval trachea2 30 of 4 0.16Down
Larval carcass3 00 of 4 0.17Down
S2 cells (growing)2 00 of 4 0.14Down
Whole fly18 24 of 4

Looking for FBgn0034898. 1 entries matched from 18771, in 2 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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