FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0034899 through 18771 annotations produced 1 hits

():

Annotation Number : CG13560
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID :
Gbrowse : chr2R:19635121-19637322 (+) // 100.0 //
Probeset : 1640579_at
Accessions : protein= NP_611823;, nucleotide= NM_137979;

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	5 ± 1	1 of 4	1.10	None
Head	2 ± 0	0 of 4	0.50	None
Eye	2 ± 0	0 of 4	0.44	None
Thoracicoabdominal ganglion	5 ± 0	0 of 4	1.10	None
Salivary gland	10 ± 3	0 of 4	2.05	None
Crop	9 ± 1	1 of 4	1.80	None
Midgut	8 ± 1	0 of 4	1.60	None
Tubule	7 ± 0	0 of 4	1.40	Up
Hindgut	7 ± 2	1 of 4	1.40	None
Heart	5 ± 0	0 of 4	1.07	None
Fat body	6 ± 4	0 of 4	1.34	None
Ovary	4 ± 1	0 of 4	0.90	None
Testis	6 ± 1	0 of 4	1.30	None
Male accessory glands	9 ± 3	0 of 4	1.80	None
Virgin spermatheca	7 ± 2	0 of 4	1.48	None
Mated spermatheca	7 ± 2	0 of 4	1.52	None
Adult carcass	13 ± 2	1 of 4	2.70	Up
Larval CNS	7 ± 2	1 of 4	1.37	None
Larval Salivary gland	44 ± 9	4 of 4	8.69	Up
Larval midgut	11 ± 1	0 of 4	2.32	Up
Larval tubule	5 ± 0	0 of 4	1.10	None
Larval hindgut	5 ± 0	0 of 4	1.06	None
Larval fat body	9 ± 1	0 of 4	1.80	None
Larval trachea	4 ± 2	0 of 4	0.92	None
Larval carcass	9 ± 2	1 of 4	1.80	None
S2 cells (growing)	6 ± 1	0 of 4	1.35	None
Whole fly	5 ± 1	1 of 4

Looking for FBgn0034899. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720