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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0034899 through 18771 annotations produced 1 hits



():

Annotation Number : CG13560
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID :
Gbrowse : chr2R:19635121-19637322 (+) // 100.0 //
Probeset : 1640579_at
Accessions : protein= NP_611823;, nucleotide= NM_137979;


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain5 11 of 4 1.10None
Head2 00 of 4 0.50None
Eye2 00 of 4 0.44None
Thoracicoabdominal ganglion5 00 of 4 1.10None
Salivary gland10 30 of 4 2.05None
Crop9 11 of 4 1.80None
Midgut8 10 of 4 1.60None
Tubule7 00 of 4 1.40Up
Hindgut7 21 of 4 1.40None
Heart5 00 of 4 1.07None
Fat body6 40 of 4 1.34None
Ovary4 10 of 4 0.90None
Testis6 10 of 4 1.30None
Male accessory glands9 30 of 4 1.80None
Virgin spermatheca7 20 of 4 1.48None
Mated spermatheca7 20 of 4 1.52None
Adult carcass13 21 of 4 2.70Up
Larval CNS7 21 of 4 1.37None
Larval Salivary gland44 94 of 4 8.69Up
Larval midgut11 10 of 4 2.32Up
Larval tubule5 00 of 4 1.10None
Larval hindgut5 00 of 4 1.06None
Larval fat body9 10 of 4 1.80None
Larval trachea4 20 of 4 0.92None
Larval carcass9 21 of 4 1.80None
S2 cells (growing)6 10 of 4 1.35None
Whole fly5 11 of 4

Looking for FBgn0034899. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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