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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0034900 through 18771 annotations produced 1 hits



/// (CG12491 /// CG34105):

Annotation Number : CG12491
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0034900 /// FBgn0083941
Gbrowse : chr2R:19638207-19638824 (+) // 100.0 // /// chr2R:19636758-19637375 (-) // 100.0 //
Probeset : 1639562_at
Accessions : protein= NP_001036567; /// NP_611824;, nucleotide= NM_001043102; /// NM_137980;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0034900 /// FBgn0083941.
BioGrid reports that CG12491 interacts with CG31122 CG6843 CG14454 CG3605 CG3997 CG5119 CG5478 CG7757 CG30425 .


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain0 00 of 4 0.40None
Head1 00 of 4 0.80None
Eye2 10 of 4 1.28None
Thoracicoabdominal ganglion1 00 of 4 0.60None
Salivary gland17 40 of 4 8.29Up
Crop6 20 of 4 3.10None
Midgut9 10 of 4 4.30Up
Tubule4 00 of 4 2.10Up
Hindgut5 10 of 4 2.40None
Heart1 00 of 4 0.54None
Fat body6 50 of 4 2.99None
Ovary1 00 of 4 0.90None
Testis0 00 of 4 0.40None
Male accessory glands6 30 of 4 3.10None
Virgin spermatheca6 00 of 4 2.91Up
Mated spermatheca7 20 of 4 3.34None
Adult carcass8 30 of 4 4.00None
Larval CNS3 10 of 4 1.53None
Larval Salivary gland324 774 of 4152.45Up
Larval midgut1 00 of 4 0.55None
Larval tubule6 10 of 4 2.80None
Larval hindgut1 00 of 4 0.51None
Larval fat body1 00 of 4 0.60None
Larval trachea0 00 of 4 0.31None
Larval carcass3 10 of 4 1.59None
S2 cells (growing)0 00 of 4 0.29None
Whole fly2 00 of 4

Looking for FBgn0034900. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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