FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0034902 through 18771 annotations produced 1 hits

(CG5532):

Annotation Number : CG5532
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0034902
Gbrowse : chr2R:19640286-19640934 (+) // 100.0 //
Probeset : 1634713_at
Accessions : protein= NP_611826;, nucleotide= NM_137982;
Pathway : 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electron
FlyMine data for FBgn0034902.
BDGP gene expression has embryonic in situ data for CG5532: 41 pix of staining in 9 body parts.
BioGrid reports that CG5532 interacts with CG8292 .
VDRC has 4 RNAi stocks for FBgn0034902 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	417 ± 8	4 of 4	0.90	Down
Head	777 ± 12	4 of 4	1.60	Up
Eye	984 ± 18	4 of 4	2.05	Up
Thoracicoabdominal ganglion	631 ± 31	4 of 4	1.30	Up
Salivary gland	1079 ± 41	4 of 4	2.24	Up
Crop	1081 ± 15	4 of 4	2.20	Up
Midgut	911 ± 11	4 of 4	1.90	Up
Tubule	587 ± 19	4 of 4	1.20	Up
Hindgut	883 ± 6	4 of 4	1.80	Up
Heart	1814 ± 52	4 of 4	3.77	Up
Fat body	1572 ± 64	4 of 4	3.27	Up
Ovary	387 ± 12	4 of 4	0.80	Down
Testis	162 ± 6	4 of 4	0.30	Down
Male accessory glands	603 ± 19	4 of 4	1.30	Up
Virgin spermatheca	990 ± 63	4 of 4	2.06	Up
Mated spermatheca	920 ± 41	4 of 4	1.91	Up
Adult carcass	1364 ± 51	4 of 4	2.80	Up
Larval CNS	624 ± 17	4 of 4	1.30	Up
Larval Salivary gland	1016 ± 22	4 of 4	2.11	Up
Larval midgut	1119 ± 49	4 of 4	2.33	Up
Larval tubule	999 ± 21	4 of 4	2.10	Up
Larval hindgut	680 ± 16	4 of 4	1.42	Up
Larval fat body	980 ± 135	4 of 4	2.00	Up
Larval trachea	771 ± 21	4 of 4	1.61	Up
Larval carcass	987 ± 31	4 of 4	2.05	Up
S2 cells (growing)	1381 ± 13	4 of 4	2.87	Up
Whole fly	480 ± 17	4 of 4

Looking for FBgn0034902. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720