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FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0034903 through 18771 annotations produced 3 hits



Dlg-interacting metalloprotease (CG9850):

Annotation Number : CG9850
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0034903
Gbrowse : chr2R:19641236-19656599 (-) // 100.0 //
Probeset : 1632432_at
Accessions : protein= NP_001027572; /// NP_001137746; /// NP_611827;, nucleotide= NM_001032400; /// NM_001144274; /// NM_137983;
Interpro : 0004222 // metalloendopeptidase activity // inferred from electronic annotation /// 0005515 // protein binding // inferr
FlyMine data for FBgn0034903.
BDGP gene expression has embryonic in situ data for CG9850: 4 pix of staining in 1 body parts.
Homophila reports that CG9850 is a close match (3e-11) to human gene ADAMTS10;WMS (NP_112219), a gene associated with Weill-Marchesani syndrome, recessive, 277600 (3).
BioGrid reports that CG9850 interacts with CG9930 .
VDRC has 3 RNAi stocks for FBgn0034903 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain26 ± 14 of 4 0.30None
Head53 ± 34 of 4 0.50None
Eye59 ± 34 of 4 0.59None
Thoracicoabdominal ganglion23 ± 24 of 4 0.20Down
Salivary gland49 ± 63 of 4 0.49None
Crop188 ± 44 of 4 1.90Up
Midgut3 ± 00 of 4 0.00Down
Tubule8 ± 10 of 4 0.10Down
Hindgut121 ± 54 of 4 1.20None
Heart11 ± 21 of 4 0.11Down
Fat body23 ± 40 of 4 0.23Down
Ovary122 ± 184 of 4 1.20None
Testis60 ± 34 of 4 0.60None
Male accessory glands5 ± 10 of 4 0.10Down
Virgin spermatheca36 ± 14 of 4 0.36None
Mated spermatheca42 ± 83 of 4 0.41None
Adult carcass90 ± 63 of 4 0.90None
Larval CNS8 ± 42 of 4 0.08Down
Larval Salivary gland461 ± 324 of 4 4.55Up
Larval midgut8 ± 30 of 4 0.08Down
Larval tubule6 ± 20 of 4 0.10Down
Larval hindgut347 ± 214 of 4 3.42Up
Larval fat body16 ± 61 of 4 0.20Down
Larval trachea538 ± 624 of 4 5.31Up
Larval carcass2057 ± 6074 of 420.28Up
S2 cells (growing)1 ± 00 of 4 0.01Down
Whole fly101 ± 224 of 4



Dlg-interacting metalloprotease (CG9850):

Annotation Number : CG11169
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0034903
Gbrowse : chr2R:19673371-19685110 (-) // 100.0 //
Probeset : 1631220_at
Accessions : protein= NP_001027572; /// NP_001137746; /// NP_611827;, nucleotide= NM_001032400; /// NM_001144274; /// NM_137983;
Interpro : 0004222 // metalloendopeptidase activity // inferred from electronic annotation /// 0005515 // protein binding // inferr
FlyMine data for FBgn0034903.
BDGP gene expression has embryonic in situ data for CG9850: 4 pix of staining in 1 body parts.
VDRC has 3 RNAi stocks for FBgn0034903 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 ± 00 of 4 0.20Down
Head2 ± 10 of 4 0.30Down
Eye2 ± 00 of 4 0.36Down
Thoracicoabdominal ganglion2 ± 00 of 4 0.30Down
Salivary gland7 ± 40 of 4 1.05None
Crop5 ± 20 of 4 0.70None
Midgut2 ± 00 of 4 0.30Down
Tubule0 ± 00 of 4 0.10Down
Hindgut6 ± 00 of 4 0.90None
Heart1 ± 00 of 4 0.23Down
Fat body3 ± 20 of 4 0.47None
Ovary3 ± 00 of 4 0.40None
Testis2 ± 00 of 4 0.30Down
Male accessory glands4 ± 20 of 4 0.60None
Virgin spermatheca2 ± 10 of 4 0.30Down
Mated spermatheca3 ± 00 of 4 0.45None
Adult carcass2 ± 00 of 4 0.30Down
Larval CNS2 ± 10 of 4 0.39None
Larval Salivary gland10 ± 31 of 4 1.34None
Larval midgut2 ± 10 of 4 0.33Down
Larval tubule3 ± 00 of 4 0.50None
Larval hindgut13 ± 20 of 4 1.74None
Larval fat body8 ± 20 of 4 1.10None
Larval trachea8 ± 20 of 4 1.17None
Larval carcass43 ± 181 of 4 5.81None
S2 cells (growing)2 ± 00 of 4 0.33Down
Whole fly7 ± 10 of 4



Dlg-interacting metalloprotease (CG9850):

Annotation Number : S.C2R002669
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0034903
Gbrowse : chr2R:19656055-19668538 (-) // 99.22 //
Probeset : 1636278_at
Accessions : protein= NP_001027572; /// NP_001137746; /// NP_611827;, nucleotide= NM_001032400; /// NM_001144274; /// NM_137983;
Interpro : 0004222 // metalloendopeptidase activity // inferred from electronic annotation /// 0005515 // protein binding // inferr
FlyMine data for FBgn0034903.
BDGP gene expression has embryonic in situ data for CG9850: 4 pix of staining in 1 body parts.
VDRC has 3 RNAi stocks for FBgn0034903 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 ± 00 of 4 0.40None
Head2 ± 00 of 4 0.60None
Eye3 ± 10 of 4 0.73None
Thoracicoabdominal ganglion5 ± 10 of 4 1.20None
Salivary gland8 ± 10 of 4 2.05None
Crop1 ± 00 of 4 0.30None
Midgut2 ± 10 of 4 0.70None
Tubule4 ± 00 of 4 1.10None
Hindgut4 ± 21 of 4 1.10None
Heart3 ± 11 of 4 0.77None
Fat body2 ± 10 of 4 0.59None
Ovary2 ± 01 of 4 0.60None
Testis1 ± 00 of 4 0.40None
Male accessory glands4 ± 00 of 4 1.00None
Virgin spermatheca5 ± 10 of 4 1.38None
Mated spermatheca3 ± 11 of 4 0.75None
Adult carcass4 ± 00 of 4 1.00None
Larval CNS1 ± 10 of 4 0.32None
Larval Salivary gland4 ± 01 of 4 0.96None
Larval midgut5 ± 10 of 4 1.26None
Larval tubule2 ± 00 of 4 0.60None
Larval hindgut7 ± 04 of 4 1.66None
Larval fat body3 ± 10 of 4 0.70None
Larval trachea2 ± 20 of 4 0.50None
Larval carcass4 ± 11 of 4 1.09None
S2 cells (growing)3 ± 01 of 4 0.73None
Whole fly4 ± 10 of 4

Looking for FBgn0034903. 3 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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