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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0034908 through 18771 annotations produced 1 hits



(CG5543):

Annotation Number : CG5543
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0034908
Gbrowse : chr2R:19696767-19698907 (+) // 100.0 //
Probeset : 1624247_at
Accessions : protein= NP_611832;, nucleotide= NM_137988;
FlyMine data for FBgn0034908.
BDGP gene expression has embryonic in situ data for CG5543: 6 pix of staining in 1 body parts.
VDRC has 4 RNAi stocks for FBgn0034908 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain38 14 of 4 1.00None
Head24 04 of 4 0.60Down
Eye22 14 of 4 0.62Down
Thoracicoabdominal ganglion37 24 of 4 1.00None
Salivary gland36 20 of 4 0.98None
Crop30 14 of 4 0.80None
Midgut9 10 of 4 0.30Down
Tubule22 12 of 4 0.60Down
Hindgut25 02 of 4 0.70Down
Heart15 24 of 4 0.43Down
Fat body14 30 of 4 0.39Down
Ovary87 14 of 4 2.40Up
Testis29 44 of 4 0.80None
Male accessory glands19 51 of 4 0.50Down
Virgin spermatheca21 14 of 4 0.59Down
Mated spermatheca25 04 of 4 0.69Down
Adult carcass20 50 of 4 0.60Down
Larval CNS57 64 of 4 1.56Up
Larval Salivary gland55 54 of 4 1.50Up
Larval midgut14 40 of 4 0.38Down
Larval tubule32 34 of 4 0.90None
Larval hindgut22 24 of 4 0.61Down
Larval fat body21 13 of 4 0.60Down
Larval trachea32 14 of 4 0.87None
Larval carcass28 12 of 4 0.76None
S2 cells (growing)62 34 of 4 1.70Up
Whole fly37 34 of 4

Looking for FBgn0034908. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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