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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0034910 through 18771 annotations produced 1 hits


Annotation Number : CG4763
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0034910
Gbrowse : chr2R:19710879-19712391 (-) // 100.0 //
Probeset : 1629769_at
Accessions : protein= NP_611835;, nucleotide= NM_137991;
FlyMine data for FBgn0034910.
VDRC has 2 RNAi stocks for FBgn0034910 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain0 00 of 4 0.10None
Head0 00 of 4 0.20None
Eye1 00 of 4 0.41None
Thoracicoabdominal ganglion0 00 of 4 0.10None
Salivary gland3 10 of 4 0.85None
Crop0 00 of 4 0.20None
Midgut1 00 of 4 0.30None
Tubule1 00 of 4 0.30Down
Hindgut1 10 of 4 0.50None
Heart2 00 of 4 0.79None
Fat body2 10 of 4 0.77None
Ovary0 00 of 4 0.20None
Testis9 12 of 4 2.70None
Male accessory glands3 20 of 4 0.80None
Virgin spermatheca1 00 of 4 0.49None
Mated spermatheca1 00 of 4 0.50None
Adult carcass1 10 of 4 0.50None
Larval CNS0 00 of 4 0.14None
Larval Salivary gland3 20 of 4 0.99None
Larval midgut0 00 of 4 0.25None
Larval tubule0 00 of 4 0.20None
Larval hindgut1 00 of 4 0.37None
Larval fat body2 10 of 4 0.80None
Larval trachea0 00 of 4 0.21None
Larval carcass2 10 of 4 0.73None
S2 cells (growing)1 00 of 4 0.43None
Whole fly3 20 of 4

Looking for FBgn0034910. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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