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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0034911 through 18771 annotations produced 1 hits



(CG5549):

Annotation Number : CG5549
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0034911
Gbrowse : chr2R:19717518-19724863 (+) // 100.0 //
Probeset : 1638251_at
Accessions : protein= NP_611836;, nucleotide= NM_137992;
Pathway : 0005887 // integral to plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from e
Interpro : 0005326 // neurotransmitter transporter activity // inferred from sequence or structural similarity /// 0005328 // neuro
FlyMine data for FBgn0034911.
Homophila reports that CG5549 is a close match (2e-88) to human gene HND;SLC6A19 (NP_001003841), a gene associated with Hartnup disorder, 234500 (3).
VDRC has 1 RNAi stocks for FBgn0034911 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain7 11 of 4 3.40Up
Head1 00 of 4 0.80None
Eye1 00 of 4 0.56None
Thoracicoabdominal ganglion4 10 of 4 1.80None
Salivary gland6 10 of 4 2.78None
Crop2 00 of 4 0.90None
Midgut1 00 of 4 0.70None
Tubule2 00 of 4 1.00None
Hindgut2 00 of 4 0.90None
Heart0 00 of 4 0.30None
Fat body0 00 of 4 0.37None
Ovary1 00 of 4 0.50None
Testis2 00 of 4 0.90None
Male accessory glands4 10 of 4 1.80None
Virgin spermatheca3 10 of 4 1.30None
Mated spermatheca2 10 of 4 1.20None
Adult carcass1 00 of 4 0.50None
Larval CNS1 00 of 4 0.52None
Larval Salivary gland1 00 of 4 0.76None
Larval midgut1 00 of 4 0.63None
Larval tubule1 00 of 4 0.60None
Larval hindgut1 00 of 4 0.55None
Larval fat body0 00 of 4 0.40None
Larval trachea1 00 of 4 0.60None
Larval carcass2 10 of 4 1.18None
S2 cells (growing)0 00 of 4 0.37None
Whole fly2 10 of 4

Looking for FBgn0034911. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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