FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0034915 through 18771 annotations produced 1 hits

eIF6 (eIF6):

Annotation Number : CG17611
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0034915
Gbrowse : chr2R:19736768-19737822 (-) // 100.0 //
Probeset : 1633284_at
Accessions : protein= NP_659573;, nucleotide= NM_145105;
Pathway : 0005829 // cytosol // inferred from sequence or structural similarity /// 0005829 // cytosol // non-traceable author sta
Interpro : 0003743 // translation initiation factor activity // inferred from sequence or structural similarity /// 0003743 // tran
FlyMine data for FBgn0034915.
BDGP gene expression has embryonic in situ data for eIF6: 9 pix of staining in 8 body parts.
VDRC has 1 RNAi stocks for FBgn0034915 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	87 ± 1	4 of 4	0.40	Down
Head	123 ± 6	4 of 4	0.50	Down
Eye	101 ± 4	4 of 4	0.42	Down
Thoracicoabdominal ganglion	114 ± 5	4 of 4	0.50	Down
Salivary gland	157 ± 10	4 of 4	0.64	Down
Crop	133 ± 4	4 of 4	0.50	Down
Midgut	219 ± 13	4 of 4	0.90	None
Tubule	132 ± 12	4 of 4	0.50	Down
Hindgut	125 ± 3	4 of 4	0.50	Down
Heart	121 ± 2	4 of 4	0.50	Down
Fat body	151 ± 12	4 of 4	0.62	Down
Ovary	342 ± 4	4 of 4	1.40	Up
Testis	239 ± 8	4 of 4	1.00	None
Male accessory glands	248 ± 8	4 of 4	1.00	None
Virgin spermatheca	94 ± 6	4 of 4	0.39	Down
Mated spermatheca	121 ± 2	4 of 4	0.50	Down
Adult carcass	145 ± 6	4 of 4	0.60	Down
Larval CNS	353 ± 9	4 of 4	1.45	Up
Larval Salivary gland	264 ± 11	4 of 4	1.08	None
Larval midgut	148 ± 10	4 of 4	0.61	Down
Larval tubule	113 ± 5	4 of 4	0.50	Down
Larval hindgut	183 ± 10	4 of 4	0.75	Down
Larval fat body	137 ± 9	4 of 4	0.60	Down
Larval trachea	321 ± 42	4 of 4	1.32	Up
Larval carcass	270 ± 51	4 of 4	1.11	None
S2 cells (growing)	327 ± 3	4 of 4	1.34	Up
Whole fly	244 ± 11	4 of 4

Looking for FBgn0034915. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720