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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0034918 through 18771 annotations produced 1 hits



within bgcn (wibg):

Annotation Number : CG30176
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0034918
Gbrowse : chr2R:19743471-19744457 (-) // 100.0 //
Probeset : 1640905_at
Accessions : protein= NP_726372;, nucleotide= NM_166627;
Pathway : nonsense-mediated decay // inferred from sequence or structural similarity"
Interpro : 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from direct assay /// 000
FlyMine data for FBgn0034918.
BDGP gene expression has embryonic in situ data for wibg: 4 pix of staining in 1 body parts.
TRiP has 2 RNAi stocks for FBgn0034918 available for purchase.
VDRC has 2 RNAi stocks for FBgn0034918 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain143 54 of 4 0.60Down
Head85 74 of 4 0.40Down
Eye108 34 of 4 0.44Down
Thoracicoabdominal ganglion139 54 of 4 0.60Down
Salivary gland88 64 of 4 0.36Down
Crop120 84 of 4 0.50Down
Midgut79 14 of 4 0.30Down
Tubule61 34 of 4 0.30Down
Hindgut104 14 of 4 0.40Down
Heart125 104 of 4 0.51Down
Fat body102 74 of 4 0.42Down
Ovary488 54 of 4 2.00Up
Testis98 74 of 4 0.40Down
Male accessory glands108 64 of 4 0.40Down
Virgin spermatheca85 54 of 4 0.35Down
Mated spermatheca88 74 of 4 0.37Down
Adult carcass83 24 of 4 0.30Down
Larval CNS276 194 of 4 1.14Up
Larval Salivary gland149 74 of 4 0.61Down
Larval midgut74 44 of 4 0.31Down
Larval tubule125 44 of 4 0.50Down
Larval hindgut125 24 of 4 0.52Down
Larval fat body105 64 of 4 0.40Down
Larval trachea326 324 of 4 1.34Up
Larval carcass153 94 of 4 0.63Down
S2 cells (growing)231 44 of 4 0.95None
Whole fly243 74 of 4

Looking for FBgn0034918. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime