Flyatlas logo

FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
Home & Search
Batch/table Search
Tissues Search
BLASTP Search
About & FAQ
Top 50
Original data
Interesting meta-analysis
Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0034919 through 18771 annotations produced 1 hits



(CG5569):

Annotation Number : CG5569
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0034919
Gbrowse : chr2R:19752943-19754126 (+) // 100.0 //
Probeset : 1640713_at
Accessions : protein= NP_611840;, nucleotide= NM_137996;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0034919.
BDGP gene expression has embryonic in situ data for CG5569: 4 pix of staining in 1 body parts.
BioGrid reports that CG5569 interacts with CG5846 .
VDRC has 3 RNAi stocks for FBgn0034919 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain261 ± 34 of 4 1.20Up
Head167 ± 44 of 4 0.80Down
Eye189 ± 84 of 4 0.86Down
Thoracicoabdominal ganglion344 ± 174 of 4 1.60Up
Salivary gland96 ± 114 of 4 0.44Down
Crop196 ± 74 of 4 0.90Down
Midgut122 ± 14 of 4 0.60Down
Tubule73 ± 34 of 4 0.30Down
Hindgut116 ± 34 of 4 0.50Down
Heart186 ± 34 of 4 0.84Down
Fat body168 ± 144 of 4 0.76Down
Ovary349 ± 104 of 4 1.60Up
Testis396 ± 84 of 4 1.80Up
Male accessory glands85 ± 94 of 4 0.40Down
Virgin spermatheca88 ± 54 of 4 0.40Down
Mated spermatheca118 ± 44 of 4 0.54Down
Adult carcass240 ± 144 of 4 1.10None
Larval CNS154 ± 154 of 4 0.70Down
Larval Salivary gland106 ± 34 of 4 0.48Down
Larval midgut91 ± 94 of 4 0.41Down
Larval tubule84 ± 24 of 4 0.40Down
Larval hindgut150 ± 104 of 4 0.68Down
Larval fat body120 ± 154 of 4 0.50Down
Larval trachea153 ± 224 of 4 0.69Down
Larval carcass146 ± 244 of 4 0.66Down
S2 cells (growing)107 ± 14 of 4 0.49Down
Whole fly221 ± 64 of 4

Looking for FBgn0034919. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime