FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0034920 through 18771 annotations produced 1 hits

(CG5597):

Annotation Number : CG5597
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0034920
Gbrowse : chr2R:19774496-19776300 (+) // 100.0 //
Probeset : 1638697_at
Accessions : protein= NP_611841;, nucleotide= NM_137997;
FlyMine data for FBgn0034920.
BDGP gene expression has embryonic in situ data for CG5597: 4 pix of staining in 1 body parts.
VDRC has 1 RNAi stocks for FBgn0034920 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	15 ± 0	0 of 4	0.10	Down
Head	498 ± 27	4 of 4	1.80	Up
Eye	838 ± 21	4 of 4	3.01	Up
Thoracicoabdominal ganglion	29 ± 3	3 of 4	0.10	Down
Salivary gland	21 ± 8	0 of 4	0.08	Down
Crop	1973 ± 34	4 of 4	7.10	Up
Midgut	192 ± 9	4 of 4	0.70	Down
Tubule	19 ± 2	1 of 4	0.10	Down
Hindgut	1011 ± 21	4 of 4	3.60	Up
Heart	1707 ± 76	4 of 4	6.13	Up
Fat body	51 ± 12	4 of 4	0.18	Down
Ovary	20 ± 1	4 of 4	0.10	Down
Testis	34 ± 3	4 of 4	0.10	Down
Male accessory glands	134 ± 6	4 of 4	0.50	Down
Virgin spermatheca	30 ± 1	4 of 4	0.11	Down
Mated spermatheca	42 ± 5	4 of 4	0.15	Down
Adult carcass	795 ± 47	4 of 4	2.90	Up
Larval CNS	13 ± 3	0 of 4	0.05	Down
Larval Salivary gland	9 ± 2	1 of 4	0.03	Down
Larval midgut	109 ± 3	4 of 4	0.39	Down
Larval tubule	16 ± 1	1 of 4	0.10	Down
Larval hindgut	664 ± 33	4 of 4	2.39	Up
Larval fat body	6 ± 2	0 of 4	0.00	Down
Larval trachea	76 ± 70	4 of 4	0.28	Down
Larval carcass	1076 ± 21	4 of 4	3.87	Up
S2 cells (growing)	3 ± 0	0 of 4	0.01	Down
Whole fly	278 ± 19	4 of 4

Looking for FBgn0034920. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720