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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0034921 through 18771 annotations produced 1 hits



Decapping protein 1 (Dcp1):

Annotation Number : CG11183
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0034921
Gbrowse : chr2R:19776464-19777788 (-) // 100.0 //
Probeset : 1636243_at
Accessions : protein= NP_001163282; /// NP_611842;, nucleotide= NM_001169811; /// NM_137998;
Pathway : nonsense-mediated decay // inferred from mutant phenotype /// 0000956 // nuclear-transcribed mRNA catabolic process //
Interpro : 0000932 // cytoplasmic mRNA processing body // inferred from direct assay /// 0043186 // P granule // inferred from dire
FlyMine data for FBgn0034921.
BioGrid reports that CG11183 interacts with CG9821 CG11901 CG5345 CG7360 CG8604 .
VDRC has 3 RNAi stocks for FBgn0034921 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain131 ± 34 of 4 1.30Up
Head98 ± 34 of 4 1.00None
Eye97 ± 34 of 4 0.95None
Thoracicoabdominal ganglion108 ± 34 of 4 1.10None
Salivary gland110 ± 64 of 4 1.08None
Crop98 ± 34 of 4 1.00None
Midgut84 ± 24 of 4 0.80Down
Tubule56 ± 14 of 4 0.60Down
Hindgut83 ± 24 of 4 0.80Down
Heart64 ± 44 of 4 0.63Down
Fat body71 ± 54 of 4 0.70Down
Ovary195 ± 54 of 4 1.90Up
Testis42 ± 34 of 4 0.40Down
Male accessory glands190 ± 64 of 4 1.90Up
Virgin spermatheca55 ± 14 of 4 0.55Down
Mated spermatheca63 ± 34 of 4 0.62Down
Adult carcass67 ± 84 of 4 0.70Down
Larval CNS219 ± 174 of 4 2.15Up
Larval Salivary gland116 ± 54 of 4 1.15None
Larval midgut88 ± 44 of 4 0.87None
Larval tubule90 ± 24 of 4 0.90Down
Larval hindgut99 ± 44 of 4 0.98None
Larval fat body70 ± 54 of 4 0.70Down
Larval trachea122 ± 114 of 4 1.20Up
Larval carcass79 ± 54 of 4 0.78Down
S2 cells (growing)118 ± 14 of 4 1.16Up
Whole fly102 ± 34 of 4

Looking for FBgn0034921. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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