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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0034923 through 18771 annotations produced 2 hits



Upf3 (Upf3):

Annotation Number : CG11184
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0034923
Gbrowse : chr2R:19780763-19782510 (-) // 100.0 //
Probeset : 1630386_at
Accessions : protein= NP_726375;, nucleotide= NM_166629;
Pathway : nonsense-mediated decay // inferred from mutant phenotype /// 0016246 // RNA interference // inferred from mutant pheno
FlyMine data for FBgn0034923.
Homophila reports that CG11184 is a close match (2e-19) to human gene MRXS14;RENT3B;UPF3B (NP_542199), a gene associated with Mental retardation, X-linked, syndromic 14, 300676 (3).
BioGrid reports that CG11184 interacts with CG14853 .
VDRC has 2 RNAi stocks for FBgn0034923 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2 ± 01 of 4 0.90None
Head1 ± 00 of 4 0.40None
Eye1 ± 00 of 4 0.55None
Thoracicoabdominal ganglion3 ± 00 of 4 1.10None
Salivary gland3 ± 00 of 4 1.34None
Crop3 ± 00 of 4 1.20None
Midgut4 ± 11 of 4 1.70None
Tubule4 ± 00 of 4 1.70Up
Hindgut3 ± 10 of 4 1.30None
Heart1 ± 10 of 4 0.57None
Fat body2 ± 01 of 4 0.99None
Ovary2 ± 00 of 4 0.80None
Testis3 ± 12 of 4 1.30None
Male accessory glands4 ± 10 of 4 1.80None
Virgin spermatheca3 ± 21 of 4 1.39None
Mated spermatheca2 ± 10 of 4 1.00None
Adult carcass4 ± 10 of 4 1.70None
Larval CNS4 ± 13 of 4 1.64None
Larval Salivary gland4 ± 10 of 4 1.46None
Larval midgut3 ± 00 of 4 1.26None
Larval tubule3 ± 11 of 4 1.30None
Larval hindgut4 ± 00 of 4 1.46None
Larval fat body4 ± 12 of 4 1.70None
Larval trachea3 ± 20 of 4 1.10None
Larval carcass4 ± 10 of 4 1.69None
S2 cells (growing)3 ± 01 of 4 1.25None
Whole fly2 ± 00 of 4



Upf3 (Upf3):

Annotation Number : CG11184
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0034923
Gbrowse : chr2R:19780698-19782510 (-) // 100.0 //
Probeset : 1637092_a_at
Accessions : protein= NP_726375;, nucleotide= NM_166629;
Pathway : nonsense-mediated decay // inferred from mutant phenotype /// 0016246 // RNA interference // inferred from mutant pheno
FlyMine data for FBgn0034923.
Homophila reports that CG11184 is a close match (2e-19) to human gene MRXS14;RENT3B;UPF3B (NP_542199), a gene associated with Mental retardation, X-linked, syndromic 14, 300676 (3).
BioGrid reports that CG11184 interacts with CG14853 .
VDRC has 2 RNAi stocks for FBgn0034923 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain61 ± 14 of 4 0.90None
Head45 ± 24 of 4 0.70Down
Eye48 ± 44 of 4 0.72Down
Thoracicoabdominal ganglion60 ± 24 of 4 0.90None
Salivary gland52 ± 53 of 4 0.78None
Crop59 ± 24 of 4 0.90None
Midgut43 ± 04 of 4 0.60Down
Tubule41 ± 24 of 4 0.60Down
Hindgut41 ± 14 of 4 0.60Down
Heart44 ± 24 of 4 0.66Down
Fat body73 ± 124 of 4 1.09None
Ovary118 ± 34 of 4 1.80Up
Testis79 ± 14 of 4 1.20Up
Male accessory glands84 ± 84 of 4 1.30None
Virgin spermatheca44 ± 14 of 4 0.66Down
Mated spermatheca38 ± 34 of 4 0.58Down
Adult carcass51 ± 40 of 4 0.80Down
Larval CNS144 ± 54 of 4 2.15Up
Larval Salivary gland85 ± 54 of 4 1.28Up
Larval midgut51 ± 24 of 4 0.76Down
Larval tubule59 ± 34 of 4 0.90None
Larval hindgut66 ± 34 of 4 0.99None
Larval fat body35 ± 33 of 4 0.50Down
Larval trachea105 ± 54 of 4 1.57Up
Larval carcass68 ± 74 of 4 1.03None
S2 cells (growing)89 ± 54 of 4 1.33Up
Whole fly67 ± 34 of 4

Looking for FBgn0034923. 2 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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