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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0034924 through 18771 annotations produced 1 hits


(CG17658):

Annotation Number : CG17658
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0034924
Gbrowse : chr2R:19782600-19784526 (+) // 100.0 //
Probeset : 1624381_at
Accessions : protein= NP_611845;, nucleotide= NM_138001;
Interpro : 0005515 // protein binding // inferred from physical interaction /// 0008270 // zinc ion binding // inferred from electr
FlyMine data for FBgn0034924.
BDGP gene expression has embryonic in situ data for CG17658: 14 pix of staining in 5 body parts.
TRiP has 2 RNAi stocks for FBgn0034924 available for purchase.
VDRC has 2 RNAi stocks for FBgn0034924 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 ± 00 of 4 0.00Down
Head1 ± 00 of 4 0.00Down
Eye2 ± 00 of 4 0.05Down
Thoracicoabdominal ganglion4 ± 20 of 4 0.10Down
Salivary gland8 ± 40 of 4 0.16Down
Crop6 ± 30 of 4 0.10Down
Midgut0 ± 00 of 4 0.00Down
Tubule4 ± 00 of 4 0.10Down
Hindgut5 ± 00 of 4 0.10Down
Heart3 ± 00 of 4 0.06Down
Fat body9 ± 30 of 4 0.18Down
Ovary158 ± 104 of 4 3.00Up
Testis33 ± 24 of 4 0.60Down
Male accessory glands4 ± 10 of 4 0.10Down
Virgin spermatheca8 ± 11 of 4 0.16Down
Mated spermatheca7 ± 21 of 4 0.13Down
Adult carcass6 ± 10 of 4 0.10Down
Larval CNS11 ± 24 of 4 0.21Down
Larval Salivary gland4 ± 00 of 4 0.08Down
Larval midgut2 ± 10 of 4 0.05Down
Larval tubule5 ± 20 of 4 0.10Down
Larval hindgut5 ± 10 of 4 0.11Down
Larval fat body14 ± 31 of 4 0.30Down
Larval trachea8 ± 21 of 4 0.16Down
Larval carcass5 ± 11 of 4 0.11Down
S2 cells (growing)6 ± 10 of 4 0.13Down
Whole fly52 ± 24 of 4

Looking for FBgn0034924. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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