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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0034925 through 18771 annotations produced 1 hits



(CG5339):

Annotation Number : CG5339
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0034925
Gbrowse : chr2R:19784412-19785757 (-) // 100.0 //
Probeset : 1628299_at
Accessions : protein= NP_611846;, nucleotide= NM_138002;
FlyMine data for FBgn0034925.
BDGP gene expression has embryonic in situ data for CG5339: 8 pix of staining in 1 body parts.
VDRC has 2 RNAi stocks for FBgn0034925 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain112 ± 54 of 4 0.50Down
Head102 ± 24 of 4 0.50Down
Eye119 ± 34 of 4 0.55Down
Thoracicoabdominal ganglion89 ± 14 of 4 0.40Down
Salivary gland210 ± 164 of 4 0.98None
Crop158 ± 84 of 4 0.70Down
Midgut170 ± 124 of 4 0.80Down
Tubule123 ± 14 of 4 0.60Down
Hindgut163 ± 34 of 4 0.80Down
Heart191 ± 84 of 4 0.89None
Fat body146 ± 84 of 4 0.68Down
Ovary406 ± 154 of 4 1.90Up
Testis123 ± 84 of 4 0.60Down
Male accessory glands85 ± 34 of 4 0.40Down
Virgin spermatheca178 ± 74 of 4 0.83Down
Mated spermatheca155 ± 34 of 4 0.72Down
Adult carcass140 ± 64 of 4 0.60Down
Larval CNS133 ± 184 of 4 0.62Down
Larval Salivary gland202 ± 164 of 4 0.94None
Larval midgut123 ± 54 of 4 0.57Down
Larval tubule326 ± 114 of 4 1.50Up
Larval hindgut132 ± 34 of 4 0.61Down
Larval fat body146 ± 94 of 4 0.70Down
Larval trachea163 ± 94 of 4 0.76Down
Larval carcass96 ± 54 of 4 0.45Down
S2 cells (growing)228 ± 24 of 4 1.06None
Whole fly216 ± 114 of 4

Looking for FBgn0034925. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime