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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0034928 through 18771 annotations produced 1 hits



(CG13562):

Annotation Number : CG13562
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0034928
Gbrowse : chr2R:19791499-19792616 (+) // 100.0 //
Probeset : 1636933_at
Accessions : protein= NP_001137747; /// NP_611849;, nucleotide= NM_001144275; /// NM_138005;
FlyMine data for FBgn0034928.
VDRC has 3 RNAi stocks for FBgn0034928 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain5 ± 11 of 4 1.60None
Head6 ± 12 of 4 1.70None
Eye7 ± 20 of 4 1.95None
Thoracicoabdominal ganglion6 ± 11 of 4 1.70None
Salivary gland7 ± 30 of 4 1.97None
Crop2 ± 10 of 4 0.70None
Midgut6 ± 00 of 4 1.70Up
Tubule6 ± 10 of 4 1.80Up
Hindgut11 ± 12 of 4 3.10Up
Heart4 ± 10 of 4 1.18None
Fat body7 ± 21 of 4 2.10None
Ovary4 ± 01 of 4 1.20None
Testis2 ± 10 of 4 0.70None
Male accessory glands4 ± 20 of 4 1.30None
Virgin spermatheca4 ± 10 of 4 1.24None
Mated spermatheca8 ± 10 of 4 2.25Up
Adult carcass10 ± 31 of 4 3.00None
Larval CNS4 ± 21 of 4 1.35None
Larval Salivary gland3 ± 10 of 4 0.90None
Larval midgut3 ± 00 of 4 0.84None
Larval tubule5 ± 10 of 4 1.40None
Larval hindgut8 ± 02 of 4 2.45Up
Larval fat body6 ± 10 of 4 1.70None
Larval trachea18 ± 54 of 4 4.96Up
Larval carcass8 ± 21 of 4 2.33None
S2 cells (growing)2 ± 10 of 4 0.73None
Whole fly3 ± 02 of 4

Looking for FBgn0034928. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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