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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0034931 through 18771 annotations produced 1 hits



(CG2812):

Annotation Number : CG2812
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0034931
Gbrowse : chr2R:19812761-19814433 (+) // 100.0 //
Probeset : 1633294_at
Accessions : protein= NP_611850;, nucleotide= NM_138006;
FlyMine data for FBgn0034931.
BDGP gene expression has embryonic in situ data for CG2812: 19 pix of staining in 14 body parts.
Homophila reports that CG2812 is a close match (9e-12) to human gene GNB3 (NP_002066), a gene associated with {Hypertension, essential, susceptibility to}, 145500 (3).
BioGrid reports that CG2812 interacts with CG6608 .
VDRC has 1 RNAi stocks for FBgn0034931 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain30 ± 14 of 4 0.60Down
Head45 ± 24 of 4 0.90None
Eye98 ± 44 of 4 2.00Up
Thoracicoabdominal ganglion36 ± 34 of 4 0.70None
Salivary gland379 ± 254 of 4 7.71Up
Crop121 ± 24 of 4 2.50Up
Midgut48 ± 44 of 4 1.00None
Tubule62 ± 24 of 4 1.30Up
Hindgut60 ± 24 of 4 1.20None
Heart21 ± 24 of 4 0.43Down
Fat body47 ± 104 of 4 0.97None
Ovary61 ± 14 of 4 1.30Up
Testis19 ± 24 of 4 0.40Down
Male accessory glands513 ± 124 of 410.50Up
Virgin spermatheca58 ± 14 of 4 1.19None
Mated spermatheca73 ± 44 of 4 1.50Up
Adult carcass44 ± 24 of 4 0.90None
Larval CNS100 ± 74 of 4 2.04Up
Larval Salivary gland328 ± 104 of 4 6.69Up
Larval midgut34 ± 24 of 4 0.71Down
Larval tubule66 ± 34 of 4 1.30Up
Larval hindgut91 ± 44 of 4 1.86Up
Larval fat body73 ± 60 of 4 1.50Up
Larval trachea186 ± 134 of 4 3.80Up
Larval carcass83 ± 34 of 4 1.70Up
S2 cells (growing)12 ± 12 of 4 0.25Down
Whole fly49 ± 44 of 4

Looking for FBgn0034931. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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