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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0034933 through 18771 annotations produced 1 hits



(CG3735):

Annotation Number : CG3735
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0034933
Gbrowse : chr2R:19824908-19827274 (-) // 100.0 //
Probeset : 1625317_at
Accessions : protein= NP_611851;, nucleotide= NM_138007;
Pathway : 0005634 // nucleus // inferred from electronic annotation
FlyMine data for FBgn0034933.
VDRC has 2 RNAi stocks for FBgn0034933 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain38 14 of 4 0.40Down
Head42 44 of 4 0.50Down
Eye48 24 of 4 0.51Down
Thoracicoabdominal ganglion41 24 of 4 0.40Down
Salivary gland70 24 of 4 0.75Down
Crop65 24 of 4 0.70Down
Midgut53 14 of 4 0.60Down
Tubule49 54 of 4 0.50Down
Hindgut41 14 of 4 0.40Down
Heart29 04 of 4 0.31Down
Fat body45 84 of 4 0.49Down
Ovary207 104 of 4 2.20Up
Testis134 14 of 4 1.40Up
Male accessory glands72 34 of 4 0.80Down
Virgin spermatheca41 24 of 4 0.44Down
Mated spermatheca46 14 of 4 0.49Down
Adult carcass44 34 of 4 0.50Down
Larval CNS104 54 of 4 1.11None
Larval Salivary gland102 34 of 4 1.09None
Larval midgut43 24 of 4 0.46Down
Larval tubule43 24 of 4 0.50Down
Larval hindgut52 44 of 4 0.56Down
Larval fat body50 64 of 4 0.50Down
Larval trachea64 74 of 4 0.69Down
Larval carcass73 114 of 4 0.79None
S2 cells (growing)89 34 of 4 0.96None
Whole fly94 34 of 4

Looking for FBgn0034933. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime