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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0034936 through 18771 annotations produced 1 hits



(CG2970):

Annotation Number : CG2970
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0034936
Gbrowse : chr2R:19836723-19839984 (+) // 100.0 //
Probeset : 1626725_at
Accessions : protein= NP_611853;, nucleotide= NM_138009;
Pathway : 0016020 // membrane // inferred from electronic annotation
FlyMine data for FBgn0034936.
BDGP gene expression has embryonic in situ data for CG2970: 9 pix of staining in 5 body parts.
Homophila reports that CG2970 is a close match (1e-13) to human gene PDCN;NPHS2;SRN1 (NP_055440), a gene associated with Nephrotic syndrome, steroid-resistant, autosomal recessive, 600995 (3).
VDRC has 5 RNAi stocks for FBgn0034936 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain175 ± 84 of 4 1.10None
Head122 ± 54 of 4 0.80Down
Eye186 ± 54 of 4 1.20Up
Thoracicoabdominal ganglion172 ± 74 of 4 1.10None
Salivary gland140 ± 44 of 4 0.91None
Crop154 ± 64 of 4 1.00None
Midgut123 ± 54 of 4 0.80Down
Tubule209 ± 84 of 4 1.40Up
Hindgut160 ± 54 of 4 1.00None
Heart150 ± 74 of 4 0.97None
Fat body137 ± 84 of 4 0.89None
Ovary189 ± 64 of 4 1.20Up
Testis375 ± 134 of 4 2.40Up
Male accessory glands172 ± 64 of 4 1.10None
Virgin spermatheca146 ± 14 of 4 0.95None
Mated spermatheca113 ± 74 of 4 0.73Down
Adult carcass164 ± 74 of 4 1.10None
Larval CNS134 ± 134 of 4 0.87None
Larval Salivary gland139 ± 94 of 4 0.90None
Larval midgut105 ± 14 of 4 0.68Down
Larval tubule214 ± 64 of 4 1.40Up
Larval hindgut157 ± 54 of 4 1.02None
Larval fat body179 ± 154 of 4 1.20None
Larval trachea164 ± 154 of 4 1.06None
Larval carcass150 ± 74 of 4 0.97None
S2 cells (growing)159 ± 44 of 4 1.03None
Whole fly154 ± 104 of 4

Looking for FBgn0034936. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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