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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0034939 through 18771 annotations produced 1 hits



thoc5 (thoc5):

Annotation Number : CG2980
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0034939
Gbrowse : chr2R:19841615-19843930 (+) // 100.0 //
Probeset : 1635668_at
Accessions : protein= NP_611856;, nucleotide= NM_138012;
Pathway : 0000347 // THO complex // inferred from direct assay /// 0005634 // nucleus // inferred from electronic annotation /// 0
FlyMine data for FBgn0034939.
BDGP gene expression has embryonic in situ data for CG2980: 9 pix of staining in 4 body parts.
VDRC has 3 RNAi stocks for FBgn0034939 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain113 34 of 4 0.80Down
Head108 44 of 4 0.80Down
Eye218 34 of 4 1.53Up
Thoracicoabdominal ganglion113 34 of 4 0.80Down
Salivary gland79 74 of 4 0.56Down
Crop78 14 of 4 0.60Down
Midgut76 54 of 4 0.50Down
Tubule76 44 of 4 0.50Down
Hindgut67 04 of 4 0.50Down
Heart59 14 of 4 0.42Down
Fat body87 64 of 4 0.61Down
Ovary302 54 of 4 2.10Up
Testis102 34 of 4 0.70Down
Male accessory glands103 54 of 4 0.70Down
Virgin spermatheca83 34 of 4 0.58Down
Mated spermatheca89 24 of 4 0.63Down
Adult carcass64 44 of 4 0.50Down
Larval CNS304 174 of 4 2.14Up
Larval Salivary gland158 94 of 4 1.11None
Larval midgut73 34 of 4 0.52Down
Larval tubule89 44 of 4 0.60Down
Larval hindgut92 14 of 4 0.65Down
Larval fat body90 34 of 4 0.60Down
Larval trachea142 184 of 4 1.00None
Larval carcass90 64 of 4 0.63Down
S2 cells (growing)223 74 of 4 1.57Up
Whole fly142 74 of 4

Looking for FBgn0034939. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime