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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0034940 through 18771 annotations produced 1 hits



(CG16787):

Annotation Number : CG16787
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0034940
Gbrowse : chr2R:19843857-19844926 (-) // 100.0 //
Probeset : 1639184_at
Accessions : protein= NP_611857;, nucleotide= NM_138013;
FlyMine data for FBgn0034940.
BDGP gene expression has embryonic in situ data for CG16787: 7 pix of staining in 6 body parts.
BioGrid reports that CG16787 interacts with CG9184 .
VDRC has 3 RNAi stocks for FBgn0034940 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain133 34 of 4 1.60Up
Head63 54 of 4 0.80None
Eye42 34 of 4 0.52Down
Thoracicoabdominal ganglion171 64 of 4 2.10Up
Salivary gland39 63 of 4 0.48Down
Crop48 44 of 4 0.60Down
Midgut59 14 of 4 0.70Down
Tubule41 24 of 4 0.50Down
Hindgut56 14 of 4 0.70Down
Heart58 34 of 4 0.70Down
Fat body38 64 of 4 0.46Down
Ovary127 64 of 4 1.50Up
Testis117 24 of 4 1.40Up
Male accessory glands21 62 of 4 0.30Down
Virgin spermatheca22 24 of 4 0.27Down
Mated spermatheca23 14 of 4 0.28Down
Adult carcass66 54 of 4 0.80None
Larval CNS101 54 of 4 1.23Up
Larval Salivary gland46 14 of 4 0.56Down
Larval midgut43 24 of 4 0.52Down
Larval tubule31 14 of 4 0.40Down
Larval hindgut54 64 of 4 0.66Down
Larval fat body42 63 of 4 0.50Down
Larval trachea64 114 of 4 0.78None
Larval carcass73 114 of 4 0.89None
S2 cells (growing)123 24 of 4 1.49Up
Whole fly82 64 of 4

Looking for FBgn0034940. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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