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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0034942 through 18771 annotations produced 1 hits



(CG13566):

Annotation Number : CG13566
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0034942
Gbrowse : chr2R:19849177-19850034 (-) // 100.0 //
Probeset : 1624144_at
Accessions : protein= NP_611858;, nucleotide= NM_138014;
FlyMine data for FBgn0034942.
VDRC has 2 RNAi stocks for FBgn0034942 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain3 ± 00 of 4 1.00None
Head3 ± 10 of 4 1.10None
Eye30 ± 64 of 4 8.74Up
Thoracicoabdominal ganglion1 ± 00 of 4 0.40None
Salivary gland7 ± 20 of 4 2.08None
Crop5 ± 00 of 4 1.60None
Midgut9 ± 21 of 4 2.80None
Tubule26 ± 63 of 4 7.60Up
Hindgut10 ± 12 of 4 2.90Up
Heart1 ± 00 of 4 0.29None
Fat body3 ± 10 of 4 1.09None
Ovary4 ± 00 of 4 1.20None
Testis4 ± 10 of 4 1.20None
Male accessory glands2 ± 00 of 4 0.80None
Virgin spermatheca3 ± 10 of 4 1.00None
Mated spermatheca3 ± 10 of 4 1.05None
Adult carcass4 ± 10 of 4 1.30None
Larval CNS14 ± 73 of 4 4.08None
Larval Salivary gland6 ± 00 of 4 1.78None
Larval midgut9 ± 00 of 4 2.71Up
Larval tubule60 ± 64 of 417.30Up
Larval hindgut3 ± 10 of 4 1.01None
Larval fat body5 ± 10 of 4 1.70None
Larval trachea5 ± 31 of 4 1.53None
Larval carcass3 ± 10 of 4 1.07None
S2 cells (growing)2 ± 10 of 4 0.63None
Whole fly3 ± 10 of 4

Looking for FBgn0034942. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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