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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0034943 through 18771 annotations produced 1 hits



Flavin-containing monooxygenase 1 (Fmo-1):

Annotation Number : CG3006
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0034943
Gbrowse : chr2R:19850497-19852169 (+) // 99.59 //
Probeset : 1626953_at
Accessions : protein= NP_611859;, nucleotide= NM_138015;
Pathway : 0005739 // mitochondrion // inferred from direct assay /// 0005792 // microsome // inferred from direct assay /// 000582
Interpro : 0004497 // monooxygenase activity // inferred from direct assay /// 0004497 // monooxygenase activity // inferred from e
FlyMine data for FBgn0034943.
BDGP gene expression has embryonic in situ data for Fmo-1: 13 pix of staining in 3 body parts.
Homophila reports that CG3006 is a close match (6e-27) to human gene FMO3;TMAU (NP_008825), a gene associated with Trimethylaminuria, 602079 (3).
VDRC has 3 RNAi stocks for FBgn0034943 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain8 12 of 4 0.10Down
Head308 174 of 4 5.70Up
Eye622 494 of 411.48Up
Thoracicoabdominal ganglion5 11 of 4 0.10Down
Salivary gland18 52 of 4 0.34Down
Crop5 20 of 4 0.10Down
Midgut11 13 of 4 0.20Down
Tubule680 484 of 412.50Up
Hindgut18 34 of 4 0.30Down
Heart72 94 of 4 1.34None
Fat body194 284 of 4 3.58Up
Ovary5 03 of 4 0.10Down
Testis3 10 of 4 0.10Down
Male accessory glands14 21 of 4 0.30Down
Virgin spermatheca126 164 of 4 2.33Up
Mated spermatheca196 114 of 4 3.63Up
Adult carcass132 74 of 4 2.40Up
Larval CNS12 43 of 4 0.24Down
Larval Salivary gland13 14 of 4 0.25Down
Larval midgut58 84 of 4 1.07None
Larval tubule667 564 of 412.30Up
Larval hindgut16 24 of 4 0.30Down
Larval fat body750 644 of 413.80Up
Larval trachea12 83 of 4 0.23Down
Larval carcass8 10 of 4 0.15Down
S2 cells (growing)4 00 of 4 0.08Down
Whole fly54 54 of 4

Looking for FBgn0034943. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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