FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0034943 through 18771 annotations produced 1 hits

Flavin-containing monooxygenase 1 (Fmo-1):

Annotation Number : CG3006
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0034943
Gbrowse : chr2R:19850497-19852169 (+) // 99.59 //
Probeset : 1626953_at
Accessions : protein= NP_611859;, nucleotide= NM_138015;
Pathway : 0005739 // mitochondrion // inferred from direct assay /// 0005792 // microsome // inferred from direct assay /// 000582
Interpro : 0004497 // monooxygenase activity // inferred from direct assay /// 0004497 // monooxygenase activity // inferred from e
FlyMine data for FBgn0034943.
BDGP gene expression has embryonic in situ data for Fmo-1: 13 pix of staining in 3 body parts.
Homophila reports that CG3006 is a close match (6e-27) to human gene FMO3;TMAU (NP_008825), a gene associated with Trimethylaminuria, 602079 (3).
VDRC has 3 RNAi stocks for FBgn0034943 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	8 ± 1	2 of 4	0.10	Down
Head	308 ± 17	4 of 4	5.70	Up
Eye	622 ± 49	4 of 4	11.48	Up
Thoracicoabdominal ganglion	5 ± 1	1 of 4	0.10	Down
Salivary gland	18 ± 5	2 of 4	0.34	Down
Crop	5 ± 2	0 of 4	0.10	Down
Midgut	11 ± 1	3 of 4	0.20	Down
Tubule	680 ± 48	4 of 4	12.50	Up
Hindgut	18 ± 3	4 of 4	0.30	Down
Heart	72 ± 9	4 of 4	1.34	None
Fat body	194 ± 28	4 of 4	3.58	Up
Ovary	5 ± 0	3 of 4	0.10	Down
Testis	3 ± 1	0 of 4	0.10	Down
Male accessory glands	14 ± 2	1 of 4	0.30	Down
Virgin spermatheca	126 ± 16	4 of 4	2.33	Up
Mated spermatheca	196 ± 11	4 of 4	3.63	Up
Adult carcass	132 ± 7	4 of 4	2.40	Up
Larval CNS	12 ± 4	3 of 4	0.24	Down
Larval Salivary gland	13 ± 1	4 of 4	0.25	Down
Larval midgut	58 ± 8	4 of 4	1.07	None
Larval tubule	667 ± 56	4 of 4	12.30	Up
Larval hindgut	16 ± 2	4 of 4	0.30	Down
Larval fat body	750 ± 64	4 of 4	13.80	Up
Larval trachea	12 ± 8	3 of 4	0.23	Down
Larval carcass	8 ± 1	0 of 4	0.15	Down
S2 cells (growing)	4 ± 0	0 of 4	0.08	Down
Whole fly	54 ± 5	4 of 4

Looking for FBgn0034943. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720