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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0034951 through 18771 annotations produced 1 hits



(CG3860):

Annotation Number : CG3860
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0034951
Gbrowse : chr2R:19879660-19882573 (-) // 100.0 //
Probeset : 1640415_at
Accessions : protein= NP_611865;, nucleotide= NM_138021;
Interpro : 0005515 // protein binding // inferred from physical interaction /// 0008142 // oxysterol binding // inferred from seque
FlyMine data for FBgn0034951.
BDGP gene expression has embryonic in situ data for CG3860: 16 pix of staining in 7 body parts.
BioGrid reports that CG3860 interacts with CG4167 .
VDRC has 1 RNAi stocks for FBgn0034951 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain859 224 of 4 3.60Up
Head457 194 of 4 1.90Up
Eye360 134 of 4 1.53Up
Thoracicoabdominal ganglion687 174 of 4 2.90Up
Salivary gland420 194 of 4 1.78Up
Crop192 54 of 4 0.80Down
Midgut455 74 of 4 1.90Up
Tubule477 104 of 4 2.00Up
Hindgut306 24 of 4 1.30Up
Heart191 104 of 4 0.81Down
Fat body320 264 of 4 1.36Up
Ovary292 34 of 4 1.20Up
Testis275 84 of 4 1.20Up
Male accessory glands138 54 of 4 0.60Down
Virgin spermatheca344 134 of 4 1.46Up
Mated spermatheca291 214 of 4 1.23None
Adult carcass214 134 of 4 0.90None
Larval CNS319 244 of 4 1.35Up
Larval Salivary gland258 64 of 4 1.09Up
Larval midgut756 194 of 4 3.20Up
Larval tubule506 144 of 4 2.10Up
Larval hindgut491 134 of 4 2.08Up
Larval fat body335 114 of 4 1.40Up
Larval trachea118 34 of 4 0.50Down
Larval carcass99 14 of 4 0.42Down
S2 cells (growing)124 24 of 4 0.53Down
Whole fly236 64 of 4

Looking for FBgn0034951. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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