Flyatlas logo

FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
Home & Search
Batch/table Search
Tissues Search
BLASTP Search
About & FAQ
Top 50
Original data
Interesting meta-analysis
Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0034956 through 18771 annotations produced 1 hits



(CG4324):

Annotation Number : CG4324
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0034956
Gbrowse : chr2R:19902432-19904719 (-) // 100.0 //
Probeset : 1633630_at
Accessions : protein= NP_611868;, nucleotide= NM_138024;
Pathway : 0016021 // integral to membrane // inferred from electronic annotation
Interpro : 0005215 // transporter activity // inferred from electronic annotation /// 0015101 // organic cation transmembrane trans
FlyMine data for FBgn0034956.
BDGP gene expression has embryonic in situ data for CG4324: 10 pix of staining in 5 body parts.
Homophila reports that CG4324 is a close match (2e-11) to human gene OAT4L;SLC22A12;URAT1 (NP_653186), a gene associated with Hypouricemia, renal, 220150 (3).
BioGrid reports that CG4324 interacts with CG7371 .
VDRC has 3 RNAi stocks for FBgn0034956 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain4 ± 00 of 4 1.40None
Head4 ± 10 of 4 1.60None
Eye4 ± 00 of 4 1.67None
Thoracicoabdominal ganglion2 ± 10 of 4 0.90None
Salivary gland9 ± 30 of 4 3.11None
Crop30 ± 24 of 410.30Up
Midgut6 ± 20 of 4 2.20None
Tubule4 ± 00 of 4 1.50Up
Hindgut7 ± 10 of 4 2.70None
Heart1 ± 00 of 4 0.56None
Fat body1 ± 00 of 4 0.58None
Ovary1 ± 00 of 4 0.50None
Testis3 ± 10 of 4 1.30None
Male accessory glands4 ± 10 of 4 1.50None
Virgin spermatheca2 ± 10 of 4 0.94None
Mated spermatheca1 ± 00 of 4 0.60None
Adult carcass4 ± 21 of 4 1.50None
Larval CNS1 ± 10 of 4 0.51None
Larval Salivary gland2 ± 10 of 4 0.84None
Larval midgut2 ± 00 of 4 0.97None
Larval tubule2 ± 10 of 4 1.00None
Larval hindgut10 ± 20 of 4 3.67Up
Larval fat body2 ± 00 of 4 0.80None
Larval trachea18 ± 44 of 4 6.44Up
Larval carcass20 ± 20 of 4 6.90Up
S2 cells (growing)1 ± 00 of 4 0.60None
Whole fly2 ± 00 of 4

Looking for FBgn0034956. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime