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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0034958 through 18771 annotations produced 1 hits



(CG3907):

Annotation Number : CG3907
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0034958
Gbrowse : chr2R:19907420-19909779 (-) // 100.0 //
Probeset : 1623013_s_at
Accessions : protein= NP_611870; /// NP_726398;, nucleotide= NM_138026; /// NM_166647;
FlyMine data for FBgn0034958.
VDRC has 1 RNAi stocks for FBgn0034958 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain641 84 of 4 4.60Up
Head374 74 of 4 2.70Up
Eye428 54 of 4 3.05Up
Thoracicoabdominal ganglion697 74 of 4 5.00Up
Salivary gland736 404 of 4 5.24Up
Crop734 104 of 4 5.20Up
Midgut412 174 of 4 2.90Up
Tubule327 144 of 4 2.30Up
Hindgut391 34 of 4 2.80Up
Heart439 104 of 4 3.13Up
Fat body287 264 of 4 2.05Up
Ovary47 04 of 4 0.30Down
Testis93 54 of 4 0.70Down
Male accessory glands456 114 of 4 3.30Up
Virgin spermatheca231 174 of 4 1.65Up
Mated spermatheca250 204 of 4 1.79Up
Adult carcass293 64 of 4 2.10Up
Larval CNS367 244 of 4 2.62Up
Larval Salivary gland219 74 of 4 1.57Up
Larval midgut630 174 of 4 4.49Up
Larval tubule421 104 of 4 3.00Up
Larval hindgut348 224 of 4 2.48Up
Larval fat body231 204 of 4 1.60Up
Larval trachea304 214 of 4 2.17Up
Larval carcass347 474 of 4 2.48Up
S2 cells (growing)793 134 of 4 5.65Up
Whole fly140 44 of 4

Looking for FBgn0034958. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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