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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0034959 through 18771 annotations produced 1 hits



(CG11388):

Annotation Number : CG11388
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0034959
Gbrowse : chr2R:19909895-19911507 (+) // 100.0 //
Probeset : 1638397_at
Accessions : protein= NP_611871;, nucleotide= NM_138027;
Interpro : "0016757 // transferase activity
FlyMine data for FBgn0034959.
Homophila reports that CG11388 is a close match (6e-14) to human gene KIAA0609;LARGE;MDC1D (NP_598397), a gene associated with Muscular dystrophy, congenital, type 1D, 608840 (3);Walker-Warburg syndrome, 236670 (3).
VDRC has 3 RNAi stocks for FBgn0034959 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain670 ± 44 of 4 7.90Up
Head383 ± 34 of 4 4.50Up
Eye1144 ± 474 of 413.44Up
Thoracicoabdominal ganglion989 ± 114 of 411.60Up
Salivary gland64 ± 44 of 4 0.76None
Crop100 ± 14 of 4 1.20None
Midgut64 ± 24 of 4 0.80None
Tubule84 ± 14 of 4 1.00None
Hindgut102 ± 64 of 4 1.20None
Heart60 ± 14 of 4 0.71Down
Fat body36 ± 44 of 4 0.43Down
Ovary65 ± 44 of 4 0.80None
Testis24 ± 04 of 4 0.30Down
Male accessory glands101 ± 34 of 4 1.20None
Virgin spermatheca52 ± 24 of 4 0.62Down
Mated spermatheca58 ± 44 of 4 0.69Down
Adult carcass76 ± 14 of 4 0.90None
Larval CNS329 ± 394 of 4 3.88Up
Larval Salivary gland40 ± 34 of 4 0.48Down
Larval midgut48 ± 14 of 4 0.57Down
Larval tubule50 ± 04 of 4 0.60Down
Larval hindgut82 ± 14 of 4 0.96None
Larval fat body37 ± 24 of 4 0.40Down
Larval trachea122 ± 244 of 4 1.43Up
Larval carcass53 ± 14 of 4 0.62Down
S2 cells (growing)225 ± 64 of 4 2.65Up
Whole fly85 ± 74 of 4

Looking for FBgn0034959. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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