Flyatlas logo

FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
Home & Search
Batch/table Search
Tissues Search
BLASTP Search
About & FAQ
Top 50
Original data
Interesting meta-analysis
Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0034963 through 18771 annotations produced 2 hits



(CG13567):

Annotation Number : CG13567
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0034963
Gbrowse : chr2R:19924305-19925201 (-) // 100.0 //
Probeset : 1628924_a_at
Accessions : protein= NP_611874; /// NP_726406;, nucleotide= NM_138030; /// NM_166652;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0034963.
BioGrid reports that CG13567 interacts with CG18616 CG9177 CG15068 CG17265 .
TRiP has 1 RNAi stocks for FBgn0034963 available for purchase.
VDRC has 4 RNAi stocks for FBgn0034963 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain160 ± 14 of 4 1.20Up
Head112 ± 34 of 4 0.90Down
Eye129 ± 24 of 4 0.98None
Thoracicoabdominal ganglion143 ± 34 of 4 1.10None
Salivary gland105 ± 114 of 4 0.79None
Crop133 ± 54 of 4 1.00None
Midgut110 ± 54 of 4 0.80Down
Tubule86 ± 24 of 4 0.70Down
Hindgut90 ± 34 of 4 0.70Down
Heart80 ± 34 of 4 0.61Down
Fat body105 ± 84 of 4 0.80Down
Ovary260 ± 44 of 4 2.00Up
Testis152 ± 14 of 4 1.20Up
Male accessory glands184 ± 44 of 4 1.40Up
Virgin spermatheca100 ± 24 of 4 0.76Down
Mated spermatheca110 ± 44 of 4 0.83Down
Adult carcass113 ± 64 of 4 0.90Down
Larval CNS199 ± 84 of 4 1.51Up
Larval Salivary gland128 ± 24 of 4 0.97None
Larval midgut96 ± 34 of 4 0.73Down
Larval tubule108 ± 44 of 4 0.80Down
Larval hindgut102 ± 24 of 4 0.77Down
Larval fat body137 ± 84 of 4 1.00None
Larval trachea148 ± 64 of 4 1.12Up
Larval carcass114 ± 44 of 4 0.87Down
S2 cells (growing)165 ± 14 of 4 1.25Up
Whole fly132 ± 44 of 4



(CG13567):

Annotation Number : CG13567
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0034963
Gbrowse : chr2R:19924305-19925201 (-) // 100.0 //
Probeset : 1637979_at
Accessions : protein= NP_611874; /// NP_726406;, nucleotide= NM_138030; /// NM_166652;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0034963.
BioGrid reports that CG13567 interacts with CG18616 CG9177 CG15068 CG17265 .
TRiP has 1 RNAi stocks for FBgn0034963 available for purchase.
VDRC has 4 RNAi stocks for FBgn0034963 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2 ± 00 of 4 1.00None
Head0 ± 00 of 4 0.30None
Eye4 ± 01 of 4 1.82None
Thoracicoabdominal ganglion3 ± 00 of 4 1.30None
Salivary gland5 ± 20 of 4 2.45None
Crop0 ± 00 of 4 0.30None
Midgut4 ± 10 of 4 1.80None
Tubule2 ± 00 of 4 1.00None
Hindgut3 ± 10 of 4 1.40None
Heart1 ± 00 of 4 0.80None
Fat body3 ± 20 of 4 1.34None
Ovary2 ± 00 of 4 1.10None
Testis0 ± 00 of 4 0.20None
Male accessory glands2 ± 10 of 4 1.10None
Virgin spermatheca1 ± 00 of 4 0.58None
Mated spermatheca2 ± 00 of 4 1.08None
Adult carcass1 ± 00 of 4 0.40None
Larval CNS8 ± 23 of 4 3.34Up
Larval Salivary gland5 ± 11 of 4 2.42None
Larval midgut0 ± 00 of 4 0.38None
Larval tubule0 ± 00 of 4 0.30None
Larval hindgut2 ± 00 of 4 0.86None
Larval fat body3 ± 10 of 4 1.30None
Larval trachea5 ± 21 of 4 2.29None
Larval carcass1 ± 00 of 4 0.67None
S2 cells (growing)3 ± 00 of 4 1.39None
Whole fly2 ± 00 of 4

Looking for FBgn0034963. 2 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime