FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0034964 through 18771 annotations produced 1 hits

(CG3173):

Annotation Number : CG3173
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0034964
Gbrowse : chr2R:19925506-19931961 (+) // 100.0 //
Probeset : 1636297_at
Accessions : protein= NP_611875;, nucleotide= NM_138031;
Interpro : 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical inter
FlyMine data for FBgn0034964.
BioGrid reports that CG3173 interacts with CG33214 .
VDRC has 1 RNAi stocks for FBgn0034964 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	105 ± 0	4 of 4	1.00	None
Head	67 ± 2	4 of 4	0.70	Down
Eye	40 ± 2	4 of 4	0.39	Down
Thoracicoabdominal ganglion	106 ± 3	4 of 4	1.00	None
Salivary gland	94 ± 5	4 of 4	0.93	None
Crop	101 ± 1	4 of 4	1.00	None
Midgut	66 ± 3	4 of 4	0.70	Down
Tubule	102 ± 2	4 of 4	1.00	None
Hindgut	80 ± 3	4 of 4	0.80	Down
Heart	60 ± 2	4 of 4	0.60	Down
Fat body	89 ± 5	4 of 4	0.88	None
Ovary	182 ± 2	4 of 4	1.80	Up
Testis	96 ± 3	4 of 4	1.00	None
Male accessory glands	83 ± 9	4 of 4	0.80	None
Virgin spermatheca	99 ± 7	4 of 4	0.98	None
Mated spermatheca	99 ± 4	4 of 4	0.98	None
Adult carcass	77 ± 2	4 of 4	0.80	Down
Larval CNS	173 ± 8	4 of 4	1.71	Up
Larval Salivary gland	123 ± 2	4 of 4	1.22	Up
Larval midgut	58 ± 2	4 of 4	0.58	Down
Larval tubule	72 ± 1	4 of 4	0.70	Down
Larval hindgut	93 ± 1	4 of 4	0.92	None
Larval fat body	62 ± 4	4 of 4	0.60	Down
Larval trachea	89 ± 5	4 of 4	0.88	None
Larval carcass	75 ± 5	4 of 4	0.74	Down
S2 cells (growing)	180 ± 6	4 of 4	1.78	Up
Whole fly	101 ± 4	4 of 4

Looking for FBgn0034964. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720