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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0034965 through 18771 annotations produced 1 hits



(CG13568):

Annotation Number : CG13568
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0034965
Gbrowse : chr2R:19940551-19941500 (-) // 100.0 //
Probeset : 1635204_at
Accessions : protein= NP_001097441; /// NP_001097442; /// NP_001137748; /// NP_001137749;, nucleotide= NM_001103971; /// NM_001103972; /// NM_001144276; /// NM_001144277;
Pathway : 0016020 // membrane // inferred from electronic annotation
Interpro : 0005272 // sodium channel activity // inferred from electronic annotation
FlyMine data for FBgn0034965.
TRiP has 1 RNAi stocks for FBgn0034965 available for purchase.
VDRC has 1 RNAi stocks for FBgn0034965 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain12 04 of 4 1.00None
Head6 20 of 4 0.60None
Eye6 22 of 4 0.57None
Thoracicoabdominal ganglion44 24 of 4 3.70Up
Salivary gland11 60 of 4 0.94None
Crop3 10 of 4 0.30Down
Midgut10 40 of 4 0.90None
Tubule3 00 of 4 0.30Down
Hindgut4 10 of 4 0.30Down
Heart5 10 of 4 0.44Down
Fat body6 40 of 4 0.58None
Ovary24 13 of 4 2.10Up
Testis3 10 of 4 0.30Down
Male accessory glands8 10 of 4 0.70None
Virgin spermatheca5 10 of 4 0.44Down
Mated spermatheca3 00 of 4 0.25Down
Adult carcass11 20 of 4 1.00None
Larval CNS23 22 of 4 1.95Up
Larval Salivary gland5 30 of 4 0.45None
Larval midgut8 20 of 4 0.67None
Larval tubule9 00 of 4 0.80None
Larval hindgut5 20 of 4 0.43None
Larval fat body7 20 of 4 0.70None
Larval trachea4 20 of 4 0.42Down
Larval carcass10 30 of 4 0.92None
S2 cells (growing)12 00 of 4 1.04None
Whole fly11 23 of 4

Looking for FBgn0034965. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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