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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0034966 through 18771 annotations produced 1 hits



(CG13563):

Annotation Number : CG13563
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0034966
Gbrowse : chr2R:19943188-19945006 (+) // 100.0 //
Probeset : 1633939_at
Accessions : protein= NP_001097443;, nucleotide= NM_001103973;
FlyMine data for FBgn0034966.
VDRC has 2 RNAi stocks for FBgn0034966 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain6 03 of 4 1.40None
Head37 24 of 4 8.30Up
Eye122 84 of 427.03Up
Thoracicoabdominal ganglion11 14 of 4 2.40Up
Salivary gland26 11 of 4 5.80Up
Crop9 22 of 4 2.20None
Midgut7 00 of 4 1.60None
Tubule4 00 of 4 1.00None
Hindgut6 10 of 4 1.40None
Heart4 10 of 4 0.98None
Fat body14 24 of 4 3.12Up
Ovary6 11 of 4 1.40None
Testis2 11 of 4 0.60None
Male accessory glands15 13 of 4 3.50Up
Virgin spermatheca12 13 of 4 2.81Up
Mated spermatheca14 14 of 4 3.10Up
Adult carcass15 33 of 4 3.40Up
Larval CNS10 34 of 4 2.24Up
Larval Salivary gland9 10 of 4 2.13Up
Larval midgut6 10 of 4 1.35None
Larval tubule7 01 of 4 1.70None
Larval hindgut6 12 of 4 1.50None
Larval fat body7 31 of 4 1.60None
Larval trachea7 31 of 4 1.56None
Larval carcass7 11 of 4 1.55None
S2 cells (growing)8 04 of 4 1.96None
Whole fly4 10 of 4

Looking for FBgn0034966. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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