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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0034968 through 18771 annotations produced 2 hits



Ribosomal protein L12 (RpL12):

Annotation Number : CG3195
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0034968
Gbrowse : chr2R:19947922-19949039 (+) // 100.0 //
Probeset : 1627312_at
Accessions : protein= NP_524819; /// NP_726412; /// NP_726413;, nucleotide= NM_080080; /// NM_166655; /// NM_166656;
Pathway : 0005811 // lipid particle // inferred from direct assay /// 0005840 // ribosome // inferred from electronic annotation /
Interpro : 0003735 // structural constituent of ribosome // inferred from sequence or structural similarity /// 0003735 // structur
FlyMine data for FBgn0034968.
BioGrid reports that CG3195 interacts with CG5169 CG3335 CG4853 CG9506 .
VDRC has 3 RNAi stocks for FBgn0034968 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain214 64 of 4 3.50Up
Head142 94 of 4 2.30Up
Eye274 94 of 4 4.46Up
Thoracicoabdominal ganglion224 124 of 4 3.60Up
Salivary gland38 64 of 4 0.63Down
Crop82 44 of 4 1.30Up
Midgut25 24 of 4 0.40Down
Tubule66 14 of 4 1.10Up
Hindgut85 34 of 4 1.40Up
Heart125 84 of 4 2.04Up
Fat body197 434 of 4 3.20Up
Ovary60 24 of 4 1.00None
Testis4 13 of 4 0.10Down
Male accessory glands32 34 of 4 0.50Down
Virgin spermatheca120 54 of 4 1.96Up
Mated spermatheca78 144 of 4 1.28None
Adult carcass80 84 of 4 1.30None
Larval CNS128 164 of 4 2.09Up
Larval Salivary gland16 14 of 4 0.26Down
Larval midgut13 04 of 4 0.22Down
Larval tubule29 14 of 4 0.50Down
Larval hindgut31 24 of 4 0.50Down
Larval fat body22 24 of 4 0.40Down
Larval trachea49 74 of 4 0.80None
Larval carcass24 44 of 4 0.39Down
S2 cells (growing)225 24 of 4 3.66Up
Whole fly61 34 of 4



Ribosomal protein L12 (RpL12):

Annotation Number : CG3195
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0034968
Gbrowse : chr2R:19947922-19948938 (+) // 100.0 //
Probeset : 1640446_s_at
Accessions : protein= NP_524819; /// NP_726412; /// NP_726413;, nucleotide= NM_080080; /// NM_166655; /// NM_166656;
Pathway : 0005811 // lipid particle // inferred from direct assay /// 0005840 // ribosome // inferred from electronic annotation /
Interpro : 0003735 // structural constituent of ribosome // inferred from sequence or structural similarity /// 0003735 // structur
FlyMine data for FBgn0034968.
BioGrid reports that CG3195 interacts with CG5169 CG3335 CG4853 CG9506 .
VDRC has 3 RNAi stocks for FBgn0034968 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2464 494 of 4 0.70Down
Head3916 1404 of 4 1.10None
Eye4819 834 of 4 1.40Up
Thoracicoabdominal ganglion3241 914 of 4 0.90None
Salivary gland6932 2124 of 4 2.01Up
Crop4644 1934 of 4 1.30Up
Midgut4529 314 of 4 1.30Up
Tubule3117 204 of 4 0.90Down
Hindgut4400 694 of 4 1.30Up
Heart5316 3854 of 4 1.54Up
Fat body5302 4524 of 4 1.53Up
Ovary2945 464 of 4 0.90Down
Testis747 44 of 4 0.20Down
Male accessory glands7695 1934 of 4 2.20Up
Virgin spermatheca2307 1894 of 4 0.67Down
Mated spermatheca2819 2994 of 4 0.82None
Adult carcass4380 1304 of 4 1.30Up
Larval CNS2657 1384 of 4 0.77Down
Larval Salivary gland6370 2374 of 4 1.84Up
Larval midgut3792 894 of 4 1.10None
Larval tubule3391 404 of 4 1.00None
Larval hindgut4207 274 of 4 1.22Up
Larval fat body5495 6084 of 4 1.60Up
Larval trachea5434 884 of 4 1.57Up
Larval carcass4092 2384 of 4 1.18None
S2 cells (growing)3995 414 of 4 1.16Up
Whole fly3454 1374 of 4

Looking for FBgn0034968. 2 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime