FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0034968 through 18771 annotations produced 2 hits

Ribosomal protein L12 (RpL12):

Annotation Number : CG3195
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0034968
Gbrowse : chr2R:19947922-19948938 (+) // 100.0 //
Probeset : 1640446_s_at
Accessions : protein= NP_524819; /// NP_726412; /// NP_726413;, nucleotide= NM_080080; /// NM_166655; /// NM_166656;
Pathway : 0005811 // lipid particle // inferred from direct assay /// 0005840 // ribosome // inferred from electronic annotation /
Interpro : 0003735 // structural constituent of ribosome // inferred from sequence or structural similarity /// 0003735 // structur
FlyMine data for FBgn0034968.
BioGrid reports that CG3195 interacts with CG5169 CG3335 CG4853 CG9506 .
VDRC has 3 RNAi stocks for FBgn0034968 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	2464 ± 49	4 of 4	0.70	Down
Head	3916 ± 140	4 of 4	1.10	None
Eye	4819 ± 83	4 of 4	1.40	Up
Thoracicoabdominal ganglion	3241 ± 91	4 of 4	0.90	None
Salivary gland	6932 ± 212	4 of 4	2.01	Up
Crop	4644 ± 193	4 of 4	1.30	Up
Midgut	4529 ± 31	4 of 4	1.30	Up
Tubule	3117 ± 20	4 of 4	0.90	Down
Hindgut	4400 ± 69	4 of 4	1.30	Up
Heart	5316 ± 385	4 of 4	1.54	Up
Fat body	5302 ± 452	4 of 4	1.53	Up
Ovary	2945 ± 46	4 of 4	0.90	Down
Testis	747 ± 4	4 of 4	0.20	Down
Male accessory glands	7695 ± 193	4 of 4	2.20	Up
Virgin spermatheca	2307 ± 189	4 of 4	0.67	Down
Mated spermatheca	2819 ± 299	4 of 4	0.82	None
Adult carcass	4380 ± 130	4 of 4	1.30	Up
Larval CNS	2657 ± 138	4 of 4	0.77	Down
Larval Salivary gland	6370 ± 237	4 of 4	1.84	Up
Larval midgut	3792 ± 89	4 of 4	1.10	None
Larval tubule	3391 ± 40	4 of 4	1.00	None
Larval hindgut	4207 ± 27	4 of 4	1.22	Up
Larval fat body	5495 ± 608	4 of 4	1.60	Up
Larval trachea	5434 ± 88	4 of 4	1.57	Up
Larval carcass	4092 ± 238	4 of 4	1.18	None
S2 cells (growing)	3995 ± 41	4 of 4	1.16	Up
Whole fly	3454 ± 137	4 of 4

Ribosomal protein L12 (RpL12):

Annotation Number : CG3195
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0034968
Gbrowse : chr2R:19947922-19949039 (+) // 100.0 //
Probeset : 1627312_at
Accessions : protein= NP_524819; /// NP_726412; /// NP_726413;, nucleotide= NM_080080; /// NM_166655; /// NM_166656;
Pathway : 0005811 // lipid particle // inferred from direct assay /// 0005840 // ribosome // inferred from electronic annotation /
Interpro : 0003735 // structural constituent of ribosome // inferred from sequence or structural similarity /// 0003735 // structur
FlyMine data for FBgn0034968.
BioGrid reports that CG3195 interacts with CG5169 CG3335 CG4853 CG9506 .
VDRC has 3 RNAi stocks for FBgn0034968 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	214 ± 6	4 of 4	3.50	Up
Head	142 ± 9	4 of 4	2.30	Up
Eye	274 ± 9	4 of 4	4.46	Up
Thoracicoabdominal ganglion	224 ± 12	4 of 4	3.60	Up
Salivary gland	38 ± 6	4 of 4	0.63	Down
Crop	82 ± 4	4 of 4	1.30	Up
Midgut	25 ± 2	4 of 4	0.40	Down
Tubule	66 ± 1	4 of 4	1.10	Up
Hindgut	85 ± 3	4 of 4	1.40	Up
Heart	125 ± 8	4 of 4	2.04	Up
Fat body	197 ± 43	4 of 4	3.20	Up
Ovary	60 ± 2	4 of 4	1.00	None
Testis	4 ± 1	3 of 4	0.10	Down
Male accessory glands	32 ± 3	4 of 4	0.50	Down
Virgin spermatheca	120 ± 5	4 of 4	1.96	Up
Mated spermatheca	78 ± 14	4 of 4	1.28	None
Adult carcass	80 ± 8	4 of 4	1.30	None
Larval CNS	128 ± 16	4 of 4	2.09	Up
Larval Salivary gland	16 ± 1	4 of 4	0.26	Down
Larval midgut	13 ± 0	4 of 4	0.22	Down
Larval tubule	29 ± 1	4 of 4	0.50	Down
Larval hindgut	31 ± 2	4 of 4	0.50	Down
Larval fat body	22 ± 2	4 of 4	0.40	Down
Larval trachea	49 ± 7	4 of 4	0.80	None
Larval carcass	24 ± 4	4 of 4	0.39	Down
S2 cells (growing)	225 ± 2	4 of 4	3.66	Up
Whole fly	61 ± 3	4 of 4

Looking for FBgn0034968. 2 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720