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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0034971 through 18771 annotations produced 1 hits



(CG3209):

Annotation Number : CG3209
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0034971
Gbrowse : chr2R:19956432-19960997 (+) // 100.0 //
Probeset : 1629005_a_at
Accessions : protein= NP_611880; /// NP_726415;, nucleotide= NM_138036; /// NM_166658;
Interpro : 0003841 // 1-acylglycerol-3-phosphate O-acyltransferase activity // inferred from sequence or structural similarity ///
FlyMine data for FBgn0034971.
VDRC has 2 RNAi stocks for FBgn0034971 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain181 ± 34 of 4 0.80None
Head190 ± 124 of 4 0.90None
Eye243 ± 74 of 4 1.12None
Thoracicoabdominal ganglion172 ± 24 of 4 0.80None
Salivary gland223 ± 154 of 4 1.03None
Crop562 ± 94 of 4 2.60Up
Midgut882 ± 314 of 4 4.10Up
Tubule756 ± 194 of 4 3.50Up
Hindgut481 ± 54 of 4 2.20Up
Heart378 ± 124 of 4 1.75Up
Fat body299 ± 274 of 4 1.38Up
Ovary146 ± 44 of 4 0.70Down
Testis170 ± 24 of 4 0.80None
Male accessory glands435 ± 64 of 4 2.00Up
Virgin spermatheca224 ± 124 of 4 1.04None
Mated spermatheca238 ± 124 of 4 1.10None
Adult carcass316 ± 154 of 4 1.50Up
Larval CNS139 ± 84 of 4 0.64Down
Larval Salivary gland133 ± 84 of 4 0.62Down
Larval midgut823 ± 94 of 4 3.81Up
Larval tubule289 ± 154 of 4 1.30Up
Larval hindgut187 ± 124 of 4 0.86None
Larval fat body197 ± 144 of 4 0.90None
Larval trachea166 ± 184 of 4 0.77None
Larval carcass101 ± 44 of 4 0.47Down
S2 cells (growing)503 ± 184 of 4 2.33Up
Whole fly216 ± 184 of 4

Looking for FBgn0034971. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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